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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = TTC
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.240793 (1 seq.)
>SRA1025636
SRR035085.54455
454 Sequencing (SRP001806)
189
112
-
Glu
TTC
[SRA]
Identical group No.240820 (1 seq.)
>SRA1026268
SRR035085.175913
454 Sequencing (SRP001806)
76
152
+
Glu
TTC
[SRA]
Identical group No.240841 (1 seq.)
>SRA1026724
SRR035085.272431
454 Sequencing (SRP001806)
23
100
+
Glu
TTC
[SRA]
Identical group No.272406 (2 seq.)
>SRA1026429
SRR035085.205850
454 Sequencing (SRP001806)
80
154
+
Glu
TTC
[SRA]
>SRA1026809
SRR035085.297183
454 Sequencing (SRP001806)
82
156
+
Glu
TTC
[SRA]
Identical group No.453397 (1 seq.)
>SRA1026448
SRR035085.208683
454 Sequencing (SRP001806)
10
83
+
Glu
TTC
[SRA]
Identical group No.654229 (1 seq.)
>SRA1025444
SRR035085.7979
454 Sequencing (SRP001806)
88
14
-
Glu
TTC
[SRA]
Identical group No.654324 (1 seq.)
>SRA1026156
SRR035085.154962
454 Sequencing (SRP001806)
326
252
-
Glu
TTC
[SRA]
Identical group No.779799 (1 seq.)
>SRA1025801
SRR035085.86047
454 Sequencing (SRP001806)
273
346
+
Glu
TTC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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