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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001806)
Anticodon = TTG
HIT:
18 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.112650 (1 seq.)
>SRA1026066
SRR035085.135516
454 Sequencing (SRP001806)
436
350
-
Gln
TTG
[SRA]
Identical group No.453270 (1 seq.)
>SRA1025729
SRR035085.71766
454 Sequencing (SRP001806)
327
252
-
Gln
TTG
[SRA]
Identical group No.453293 (1 seq.)
>SRA1025851
SRR035085.94247
454 Sequencing (SRP001806)
99
26
-
Gln
TTG
[SRA]
Identical group No.453303 (1 seq.)
>SRA1025898
SRR035085.105128
454 Sequencing (SRP001806)
354
428
+
Gln
TTG
[SRA]
Identical group No.453327 (1 seq.)
>SRA1026017
SRR035085.127348
454 Sequencing (SRP001806)
155
227
+
Gln
TTG
[SRA]
Identical group No.453337 (1 seq.)
>SRA1026074
SRR035085.137729
454 Sequencing (SRP001806)
74
149
+
Gln
TTG
[SRA]
Identical group No.654247 (1 seq.)
>SRA1025571
SRR035085.40723
454 Sequencing (SRP001806)
190
117
-
Gln
TTG
[SRA]
Identical group No.654341 (1 seq.)
>SRA1026297
SRR035085.181634
454 Sequencing (SRP001806)
338
412
+
Gln
TTG
[SRA]
Identical group No.654355 (1 seq.)
>SRA1026370
SRR035085.194428
454 Sequencing (SRP001806)
374
300
-
Gln
TTG
[SRA]
Identical group No.654379 (1 seq.)
>SRA1026535
SRR035085.222531
454 Sequencing (SRP001806)
420
493
+
Gln
TTG
[SRA]
Identical group No.654383 (1 seq.)
>SRA1026550
SRR035085.226463
454 Sequencing (SRP001806)
234
308
+
Gln
TTG
[SRA]
Identical group No.654402 (1 seq.)
>SRA1026737
SRR035085.276774
454 Sequencing (SRP001806)
146
220
+
Gln
TTG
[SRA]
Identical group No.779772 (1 seq.)
>SRA1025434
SRR035085.1186
454 Sequencing (SRP001806)
157
83
-
Gln
TTG
[SRA]
Identical group No.779777 (1 seq.)
>SRA1025519
SRR035085.31742
454 Sequencing (SRP001806)
157
83
-
Gln
TTG
[SRA]
Identical group No.779780 (1 seq.)
>SRA1025591
SRR035085.44020
454 Sequencing (SRP001806)
143
70
-
Gln
TTG
[SRA]
Identical group No.779788 (1 seq.)
>SRA1025637
SRR035085.54704
454 Sequencing (SRP001806)
286
356
+
Gln
TTG
[SRA]
Identical group No.779830 (1 seq.)
>SRA1026384
SRR035085.198331
454 Sequencing (SRP001806)
246
319
+
Gln
TTG
[SRA]
Identical group No.779990 (1 seq.)
>SRA1026169
SRR035085.157123
454 Sequencing (SRP001806)
405
478
+
Gln
TTG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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