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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001807)
Anticodon = AGA
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.140958 (1 seq.)
>SRA1028768
SRR035086.430558
454 Sequencing (SRP001807)
268
351
+
Ser
AGA
[SRA]
Identical group No.184100 (37 seq.)
>WENV180051025
MPLU02183995
[MPLU] marine metagenome; 90 m water sample filtered on 0.2 um supor filter
1833
1917
+
Ser
AGA
[ENA]
¢þ
>WENV180386844
OBPD01006107
[OBPD] marine metagenome; Sea Water
102
183
+
Ser
AGA
[ENA]
¢þ
>WENV182554372
OJCU01002532
[OJCU] seawater metagenome; Sea water
855
774
-
Ser
AGA
[ENA]
¢þ
>WENV170289653
CERX01226511
[CERX] marine metagenome genome assembly TARA_068_DCM_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
537
622
+
Ser
AGA
[ENA]
¢þ
>WENV170598933
FUWD010055491
[FUWD] metagenome; unknown
631
550
-
Ser
AGA
[ENA]
¢þ
>WENV170617000
FUWD012911672
[FUWD] metagenome; unknown
286
205
-
Ser
AGA
[ENA]
¢þ
>WENV170617036
FUWD012911683
[FUWD] metagenome; unknown
2229
2148
-
Ser
AGA
[ENA]
¢þ
>WENV170617183
FUWD012916745
[FUWD] metagenome; unknown
332
413
+
Ser
AGA
[ENA]
¢þ
>WENV170621171
FUWD013051021
[FUWD] metagenome; unknown
606
687
+
Ser
AGA
[ENA]
¢þ
>WENV170624928
FUWD013188963
[FUWD] metagenome; unknown
10
91
+
Ser
AGA
[ENA]
¢þ
>WENV170629338
FUWD013267606
[FUWD] metagenome; unknown
606
687
+
Ser
AGA
[ENA]
¢þ
>WENV170633185
FUWD013392641
[FUWD] metagenome; unknown
10
91
+
Ser
AGA
[ENA]
¢þ
>SRA1026846
SRR035086.8212
454 Sequencing (SRP001807)
18
99
+
Ser
AGA
[SRA]
>SRA1027039
SRR035086.50188
454 Sequencing (SRP001807)
166
247
+
Ser
AGA
[SRA]
>SRA1027191
SRR035086.77791
454 Sequencing (SRP001807)
508
427
-
Ser
AGA
[SRA]
>SRA1027358
SRR035086.111958
454 Sequencing (SRP001807)
194
113
-
Ser
AGA
[SRA]
>SRA1027389
SRR035086.116386
454 Sequencing (SRP001807)
182
101
-
Ser
AGA
[SRA]
>SRA1027420
SRR035086.121957
454 Sequencing (SRP001807)
349
430
+
Ser
AGA
[SRA]
>SRA1027542
SRR035086.144822
454 Sequencing (SRP001807)
257
176
-
Ser
AGA
[SRA]
>SRA1027553
SRR035086.146246
454 Sequencing (SRP001807)
368
287
-
Ser
AGA
[SRA]
>SRA1027574
SRR035086.150744
454 Sequencing (SRP001807)
381
462
+
Ser
AGA
[SRA]
>SRA1027625
SRR035086.162679
454 Sequencing (SRP001807)
124
205
+
Ser
AGA
[SRA]
>SRA1027642
SRR035086.165775
454 Sequencing (SRP001807)
161
80
-
Ser
AGA
[SRA]
>SRA1027669
SRR035086.169379
454 Sequencing (SRP001807)
258
177
-
Ser
AGA
[SRA]
>SRA1027807
SRR035086.197329
454 Sequencing (SRP001807)
105
24
-
Ser
AGA
[SRA]
>SRA1027883
SRR035086.212173
454 Sequencing (SRP001807)
84
165
+
Ser
AGA
[SRA]
>SRA1027999
SRR035086.234774
454 Sequencing (SRP001807)
324
243
-
Ser
AGA
[SRA]
>SRA1028520
SRR035086.346156
454 Sequencing (SRP001807)
261
342
+
Ser
AGA
[SRA]
>SRA1028526
SRR035086.347790
454 Sequencing (SRP001807)
326
245
-
Ser
AGA
[SRA]
>SRA1028589
SRR035086.367346
454 Sequencing (SRP001807)
166
247
+
Ser
AGA
[SRA]
>SRA1028609
SRR035086.374247
454 Sequencing (SRP001807)
194
275
+
Ser
AGA
[SRA]
>SRA1028708
SRR035086.405661
454 Sequencing (SRP001807)
11
92
+
Ser
AGA
[SRA]
>SRA1050916
SRR035096.51970
454 Sequencing (SRP001817)
320
401
+
Ser
AGA
[SRA]
>SRA1050936
SRR035096.55040
454 Sequencing (SRP001817)
33
114
+
Ser
AGA
[SRA]
>SRA1051052
SRR035096.75578
454 Sequencing (SRP001817)
33
114
+
Ser
AGA
[SRA]
>SRA1051382
SRR035096.163369
454 Sequencing (SRP001817)
160
241
+
Ser
AGA
[SRA]
>SRA1051392
SRR035096.165967
454 Sequencing (SRP001817)
261
342
+
Ser
AGA
[SRA]
Identical group No.206670 (1 seq.)
>SRA1028690
SRR035086.398350
454 Sequencing (SRP001807)
297
378
+
Ser
AGA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK