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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001807)
Anticodon = CAA
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.140941 (2 seq.)
>SRA1026960
SRR035086.34231
454 Sequencing (SRP001807)
357
271
-
Leu
CAA
[SRA]
>SRA1027098
SRR035086.62963
454 Sequencing (SRP001807)
358
272
-
Leu
CAA
[SRA]
Identical group No.140950 (2 seq.)
>SRA1027756
SRR035086.187321
454 Sequencing (SRP001807)
167
81
-
Leu
CAA
[SRA]
>SRA1028110
SRR035086.260591
454 Sequencing (SRP001807)
167
81
-
Leu
CAA
[SRA]
Identical group No.157554 (9 seq.)
>WENV170619805
FUWD013021624
[FUWD] metagenome; unknown
2008
1923
-
Leu
CAA
[ENA]
¢þ
>WENV170627925
FUWD013239836
[FUWD] metagenome; unknown
2008
1923
-
Leu
CAA
[ENA]
¢þ
>SRA1027746
SRR035086.185025
454 Sequencing (SRP001807)
285
370
+
Leu
CAA
[SRA]
>SRA1028423
SRR035086.322711
454 Sequencing (SRP001807)
285
370
+
Leu
CAA
[SRA]
>SRA1046453
SRR035093.310479
454 Sequencing (SRP001814)
172
87
-
Leu
CAA
[SRA]
>SRA1047070
SRR035093.448744
454 Sequencing (SRP001814)
157
242
+
Leu
CAA
[SRA]
>SRA1050784
SRR035096.20132
454 Sequencing (SRP001817)
418
503
+
Leu
CAA
[SRA]
>SRA1051795
SRR035098.78347
454 Sequencing (SRP001819)
93
178
+
Leu
CAA
[SRA]
>SRA1053018
SRR035098.318760
454 Sequencing (SRP001819)
93
178
+
Leu
CAA
[SRA]
Identical group No.186127 (51 seq.)
>WENV170627077
FUWD013231189
[FUWD] metagenome; unknown
2262
2345
+
Leu
CAA
[ENA]
¢þ
>WENV170627080
FUWD013231190
[FUWD] metagenome; unknown
1990
2073
+
Leu
CAA
[ENA]
¢þ
>WENV170627161
FUWD013231750
[FUWD] metagenome; unknown
6838
6755
-
Leu
CAA
[ENA]
¢þ
>WENV170627165
FUWD013231752
[FUWD] metagenome; unknown
1990
2073
+
Leu
CAA
[ENA]
¢þ
>WENV170627168
FUWD013231754
[FUWD] metagenome; unknown
1990
2073
+
Leu
CAA
[ENA]
¢þ
>WENV170627205
FUWD013232034
[FUWD] metagenome; unknown
7965
7882
-
Leu
CAA
[ENA]
¢þ
>WENV170627772
FUWD013237147
[FUWD] metagenome; unknown
2262
2345
+
Leu
CAA
[ENA]
¢þ
>WENV170627776
FUWD013237153
[FUWD] metagenome; unknown
1990
2073
+
Leu
CAA
[ENA]
¢þ
>WENV170632148
FUWD013378851
[FUWD] metagenome; unknown
6838
6755
-
Leu
CAA
[ENA]
¢þ
>WENV170632152
FUWD013378861
[FUWD] metagenome; unknown
1990
2073
+
Leu
CAA
[ENA]
¢þ
>WENV170632155
FUWD013378866
[FUWD] metagenome; unknown
1990
2073
+
Leu
CAA
[ENA]
¢þ
>WENV170632688
FUWD013386175
[FUWD] metagenome; unknown
7965
7882
-
Leu
CAA
[ENA]
¢þ
>SRA1023104
SRR035084.3660
454 Sequencing (SRP001805)
399
482
+
Leu
CAA
[SRA]
>SRA1023248
SRR035084.50730
454 Sequencing (SRP001805)
393
310
-
Leu
CAA
[SRA]
>SRA1023727
SRR035084.161834
454 Sequencing (SRP001805)
93
10
-
Leu
CAA
[SRA]
>SRA1023747
SRR035084.164326
454 Sequencing (SRP001805)
195
278
+
Leu
CAA
[SRA]
>SRA1023903
SRR035084.204903
454 Sequencing (SRP001805)
288
205
-
Leu
CAA
[SRA]
>SRA1024084
SRR035084.247987
454 Sequencing (SRP001805)
300
217
-
Leu
CAA
[SRA]
>SRA1024150
SRR035084.261041
454 Sequencing (SRP001805)
222
139
-
Leu
CAA
[SRA]
>SRA1024754
SRR035084.394327
454 Sequencing (SRP001805)
195
278
+
Leu
CAA
[SRA]
>SRA1025374
SRR035084.568077
454 Sequencing (SRP001805)
157
74
-
Leu
CAA
[SRA]
>SRA1025388
SRR035084.576599
454 Sequencing (SRP001805)
393
310
-
Leu
CAA
[SRA]
>SRA1027089
SRR035086.62066
454 Sequencing (SRP001807)
324
241
-
Leu
CAA
[SRA]
>SRA1027222
SRR035086.85299
454 Sequencing (SRP001807)
25
108
+
Leu
CAA
[SRA]
>SRA1027296
SRR035086.99651
454 Sequencing (SRP001807)
134
51
-
Leu
CAA
[SRA]
>SRA1028621
SRR035086.377055
454 Sequencing (SRP001807)
283
366
+
Leu
CAA
[SRA]
>SRA1045153
SRR035093.9570
454 Sequencing (SRP001814)
122
205
+
Leu
CAA
[SRA]
>SRA1045614
SRR035093.134296
454 Sequencing (SRP001814)
121
204
+
Leu
CAA
[SRA]
>SRA1045799
SRR035093.172458
454 Sequencing (SRP001814)
402
319
-
Leu
CAA
[SRA]
>SRA1046739
SRR035093.374096
454 Sequencing (SRP001814)
313
230
-
Leu
CAA
[SRA]
>SRA1047042
SRR035093.440746
454 Sequencing (SRP001814)
214
131
-
Leu
CAA
[SRA]
>SRA1047557
SRR035093.580081
454 Sequencing (SRP001814)
3
86
+
Leu
CAA
[SRA]
>SRA1050904
SRR035096.48177
454 Sequencing (SRP001817)
188
105
-
Leu
CAA
[SRA]
>SRA1051041
SRR035096.74941
454 Sequencing (SRP001817)
377
294
-
Leu
CAA
[SRA]
>SRA1051104
SRR035096.86632
454 Sequencing (SRP001817)
238
321
+
Leu
CAA
[SRA]
>SRA1051252
SRR035096.120786
454 Sequencing (SRP001817)
425
342
-
Leu
CAA
[SRA]
>SRA1051272
SRR035096.127165
454 Sequencing (SRP001817)
52
135
+
Leu
CAA
[SRA]
>SRA1051287
SRR035096.130510
454 Sequencing (SRP001817)
100
183
+
Leu
CAA
[SRA]
>SRA1051339
SRR035096.145907
454 Sequencing (SRP001817)
254
337
+
Leu
CAA
[SRA]
>SRA1051459
SRR035098.5690
454 Sequencing (SRP001819)
119
202
+
Leu
CAA
[SRA]
>SRA1051655
SRR035098.50408
454 Sequencing (SRP001819)
204
287
+
Leu
CAA
[SRA]
>SRA1052098
SRR035098.140765
454 Sequencing (SRP001819)
138
221
+
Leu
CAA
[SRA]
>SRA1052148
SRR035098.150014
454 Sequencing (SRP001819)
354
271
-
Leu
CAA
[SRA]
>SRA1052693
SRR035098.254149
454 Sequencing (SRP001819)
175
92
-
Leu
CAA
[SRA]
>SRA1053216
SRR035098.363275
454 Sequencing (SRP001819)
48
131
+
Leu
CAA
[SRA]
>SRA1053382
SRR035098.395582
454 Sequencing (SRP001819)
353
270
-
Leu
CAA
[SRA]
>SRA1053394
SRR035098.397898
454 Sequencing (SRP001819)
1
84
+
Leu
CAA
[SRA]
>SRA1053627
SRR035098.456915
454 Sequencing (SRP001819)
95
178
+
Leu
CAA
[SRA]
>SRA1053631
SRR035098.457267
454 Sequencing (SRP001819)
94
177
+
Leu
CAA
[SRA]
>SRA1053862
SRR035098.519527
454 Sequencing (SRP001819)
234
151
-
Leu
CAA
[SRA]
>SRA1053915
SRR035098.535447
454 Sequencing (SRP001819)
241
158
-
Leu
CAA
[SRA]
Identical group No.186135 (11 seq.)
>WENV170614885
FUWD012843672
[FUWD] metagenome; unknown
2115
2196
+
Leu
CAA
[ENA]
¢þ
>WENV170626850
FUWD013229796
[FUWD] metagenome; unknown
14993
15074
+
Leu
CAA
[ENA]
¢þ
>SRA1026934
SRR035086.30517
454 Sequencing (SRP001807)
178
259
+
Leu
CAA
[SRA]
>SRA1027448
SRR035086.126514
454 Sequencing (SRP001807)
185
266
+
Leu
CAA
[SRA]
>SRA1045919
SRR035093.199507
454 Sequencing (SRP001814)
393
474
+
Leu
CAA
[SRA]
>SRA1046799
SRR035093.389413
454 Sequencing (SRP001814)
100
181
+
Leu
CAA
[SRA]
>SRA1051976
SRR035098.116656
454 Sequencing (SRP001819)
293
374
+
Leu
CAA
[SRA]
>SRA1052209
SRR035098.160766
454 Sequencing (SRP001819)
200
281
+
Leu
CAA
[SRA]
>SRA1053292
SRR035098.376418
454 Sequencing (SRP001819)
101
182
+
Leu
CAA
[SRA]
>SRA1053811
SRR035098.502829
454 Sequencing (SRP001819)
256
337
+
Leu
CAA
[SRA]
>SRA1053853
SRR035098.516606
454 Sequencing (SRP001819)
109
28
-
Leu
CAA
[SRA]
Identical group No.186148 (7 seq.)
>WENV170619817
FUWD013021644
[FUWD] metagenome; unknown
9079
9163
+
Leu
CAA
[ENA]
¢þ
>WENV170627938
FUWD013239855
[FUWD] metagenome; unknown
9079
9163
+
Leu
CAA
[ENA]
¢þ
>SRA1023453
SRR035084.102508
454 Sequencing (SRP001805)
388
304
-
Leu
CAA
[SRA]
>SRA1024676
SRR035084.374068
454 Sequencing (SRP001805)
46
130
+
Leu
CAA
[SRA]
>SRA1024768
SRR035084.396949
454 Sequencing (SRP001805)
65
149
+
Leu
CAA
[SRA]
>SRA1028317
SRR035086.299180
454 Sequencing (SRP001807)
335
251
-
Leu
CAA
[SRA]
>SRA1047339
SRR035093.516149
454 Sequencing (SRP001814)
123
39
-
Leu
CAA
[SRA]
Identical group No.198261 (4 seq.)
>WENV170621155
FUWD013050397
[FUWD] metagenome; unknown
2600
2681
+
Leu
CAA
[ENA]
¢þ
>WENV170629323
FUWD013267035
[FUWD] metagenome; unknown
2600
2681
+
Leu
CAA
[ENA]
¢þ
>SRA1027079
SRR035086.58402
454 Sequencing (SRP001807)
229
310
+
Leu
CAA
[SRA]
>SRA1053199
SRR035098.360431
454 Sequencing (SRP001819)
225
144
-
Leu
CAA
[SRA]
Identical group No.206659 (3 seq.)
>SRA1026922
SRR035086.28970
454 Sequencing (SRP001807)
298
379
+
Leu
CAA
[SRA]
>SRA1026966
SRR035086.34911
454 Sequencing (SRP001807)
298
379
+
Leu
CAA
[SRA]
>SRA1027261
SRR035086.91612
454 Sequencing (SRP001807)
299
380
+
Leu
CAA
[SRA]
Identical group No.221527 (7 seq.)
>WENV183624606
OOGD01061620
[OOGD] marine metagenome; sea ice
304
223
-
Leu
CAA
[ENA]
¢þ
>WENV170570766
FLOH01000021
[FLOH] marine metagenome; water
323524
323441
-
Leu
CAA
[ENA]
¢þ
>WENV170609198
FUWD011318169
[FUWD] metagenome; unknown
128
209
+
Leu
CAA
[ENA]
¢þ
>WENV170611931
FUWD012452162
[FUWD] metagenome; unknown
214
131
-
Leu
CAA
[ENA]
¢þ
>SRA1027859
SRR035086.207634
454 Sequencing (SRP001807)
415
334
-
Leu
CAA
[SRA]
>SRA1028085
SRR035086.255773
454 Sequencing (SRP001807)
191
108
-
Leu
CAA
[SRA]
>SRA1028168
SRR035086.269443
454 Sequencing (SRP001807)
326
245
-
Leu
CAA
[SRA]
Identical group No.225334 (1 seq.)
>SRA1027966
SRR035086.228530
454 Sequencing (SRP001807)
237
157
-
Leu
CAA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK