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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001807)
Anticodon = CAC
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.261016 (1 seq.)
>SRA1028456
SRR035086.329905
454 Sequencing (SRP001807)
290
216
-
Val
CAC
[SRA]
Identical group No.467820 (70 seq.)
>WENV180393052
OBPP01061992
[OBPP] marine metagenome; ENVO:00002042
224
297
+
Val
CAC
[ENA]
¢þ
>WENV180398929
OBQE01000157
[OBQE] marine metagenome; ENVO.00002150
250
177
-
Val
CAC
[ENA]
¢þ
>WENV180635929
OCRE01026714
[OCRE] marine metagenome; Seawater
329
257
-
Val
CAC
[ENA]
¢þ
>WENV180637941
OCRG01197835
[OCRG] marine metagenome; seawater
74
2
-
Val
CAC
[ENA]
¢þ
>WENV170424646
CEUP01001947
[CEUP] marine metagenome genome assembly TARA_123_MIX_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
259
331
+
Val
CAC
[ENA]
¢þ
>WENV170424683
CEUP01003379
[CEUP] marine metagenome genome assembly TARA_123_MIX_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
508
582
+
Val
CAC
[ENA]
¢þ
>WENV170599000
FUWD010057609
[FUWD] metagenome; unknown
74
2
-
Val
CAC
[ENA]
¢þ
>WENV170599356
FUWD010072340
[FUWD] metagenome; unknown
145
73
-
Val
CAC
[ENA]
¢þ
>WENV170599499
FUWD010077173
[FUWD] metagenome; unknown
230
158
-
Val
CAC
[ENA]
¢þ
>WENV170617032
FUWD012911683
[FUWD] metagenome; unknown
3741
3669
-
Val
CAC
[ENA]
¢þ
>WENV170617046
FUWD012911684
[FUWD] metagenome; unknown
179
107
-
Val
CAC
[ENA]
¢þ
>WENV170617244
FUWD012918844
[FUWD] metagenome; unknown
454
526
+
Val
CAC
[ENA]
¢þ
>WENV170617247
FUWD012918845
[FUWD] metagenome; unknown
130
202
+
Val
CAC
[ENA]
¢þ
>WENV170624813
FUWD013187197
[FUWD] metagenome; unknown
595
523
-
Val
CAC
[ENA]
¢þ
>WENV170633086
FUWD013391135
[FUWD] metagenome; unknown
595
523
-
Val
CAC
[ENA]
¢þ
>SRA1026841
SRR035086.5875
454 Sequencing (SRP001807)
123
51
-
Val
CAC
[SRA]
>SRA1026855
SRR035086.11226
454 Sequencing (SRP001807)
216
144
-
Val
CAC
[SRA]
>SRA1026875
SRR035086.18589
454 Sequencing (SRP001807)
139
211
+
Val
CAC
[SRA]
>SRA1026898
SRR035086.24079
454 Sequencing (SRP001807)
195
267
+
Val
CAC
[SRA]
>SRA1026978
SRR035086.37384
454 Sequencing (SRP001807)
122
50
-
Val
CAC
[SRA]
>SRA1026993
SRR035086.39304
454 Sequencing (SRP001807)
239
167
-
Val
CAC
[SRA]
>SRA1027011
SRR035086.43679
454 Sequencing (SRP001807)
526
454
-
Val
CAC
[SRA]
>SRA1027024
SRR035086.46025
454 Sequencing (SRP001807)
416
344
-
Val
CAC
[SRA]
>SRA1027109
SRR035086.63727
454 Sequencing (SRP001807)
195
123
-
Val
CAC
[SRA]
>SRA1027113
SRR035086.64441
454 Sequencing (SRP001807)
430
358
-
Val
CAC
[SRA]
>SRA1027125
SRR035086.67544
454 Sequencing (SRP001807)
381
453
+
Val
CAC
[SRA]
>SRA1027132
SRR035086.68588
454 Sequencing (SRP001807)
216
144
-
Val
CAC
[SRA]
>SRA1027188
SRR035086.77289
454 Sequencing (SRP001807)
207
135
-
Val
CAC
[SRA]
>SRA1027189
SRR035086.77366
454 Sequencing (SRP001807)
218
290
+
Val
CAC
[SRA]
>SRA1027211
SRR035086.82477
454 Sequencing (SRP001807)
286
358
+
Val
CAC
[SRA]
>SRA1027246
SRR035086.89969
454 Sequencing (SRP001807)
200
272
+
Val
CAC
[SRA]
>SRA1027309
SRR035086.104494
454 Sequencing (SRP001807)
352
424
+
Val
CAC
[SRA]
>SRA1027322
SRR035086.106739
454 Sequencing (SRP001807)
218
290
+
Val
CAC
[SRA]
>SRA1027386
SRR035086.116253
454 Sequencing (SRP001807)
145
217
+
Val
CAC
[SRA]
>SRA1027461
SRR035086.127872
454 Sequencing (SRP001807)
256
184
-
Val
CAC
[SRA]
>SRA1027583
SRR035086.151354
454 Sequencing (SRP001807)
464
536
+
Val
CAC
[SRA]
>SRA1027604
SRR035086.158360
454 Sequencing (SRP001807)
311
239
-
Val
CAC
[SRA]
>SRA1027606
SRR035086.159097
454 Sequencing (SRP001807)
219
291
+
Val
CAC
[SRA]
>SRA1027688
SRR035086.173193
454 Sequencing (SRP001807)
127
199
+
Val
CAC
[SRA]
>SRA1027700
SRR035086.176712
454 Sequencing (SRP001807)
207
135
-
Val
CAC
[SRA]
>SRA1027816
SRR035086.200161
454 Sequencing (SRP001807)
144
72
-
Val
CAC
[SRA]
>SRA1027819
SRR035086.200174
454 Sequencing (SRP001807)
194
122
-
Val
CAC
[SRA]
>SRA1027848
SRR035086.206584
454 Sequencing (SRP001807)
332
404
+
Val
CAC
[SRA]
>SRA1027906
SRR035086.216428
454 Sequencing (SRP001807)
218
290
+
Val
CAC
[SRA]
>SRA1027942
SRR035086.223217
454 Sequencing (SRP001807)
216
144
-
Val
CAC
[SRA]
>SRA1028037
SRR035086.245015
454 Sequencing (SRP001807)
247
175
-
Val
CAC
[SRA]
>SRA1028072
SRR035086.252676
454 Sequencing (SRP001807)
347
275
-
Val
CAC
[SRA]
>SRA1028101
SRR035086.258944
454 Sequencing (SRP001807)
126
54
-
Val
CAC
[SRA]
>SRA1028145
SRR035086.266929
454 Sequencing (SRP001807)
221
293
+
Val
CAC
[SRA]
>SRA1028199
SRR035086.274488
454 Sequencing (SRP001807)
235
307
+
Val
CAC
[SRA]
>SRA1028410
SRR035086.320669
454 Sequencing (SRP001807)
210
282
+
Val
CAC
[SRA]
>SRA1028494
SRR035086.339947
454 Sequencing (SRP001807)
241
169
-
Val
CAC
[SRA]
>SRA1028518
SRR035086.344654
454 Sequencing (SRP001807)
158
86
-
Val
CAC
[SRA]
>SRA1028522
SRR035086.347114
454 Sequencing (SRP001807)
127
199
+
Val
CAC
[SRA]
>SRA1028558
SRR035086.357080
454 Sequencing (SRP001807)
171
99
-
Val
CAC
[SRA]
>SRA1028602
SRR035086.370969
454 Sequencing (SRP001807)
288
216
-
Val
CAC
[SRA]
>SRA1048348
SRR035094.152677
454 Sequencing (SRP001815)
373
301
-
Val
CAC
[SRA]
>SRA1050849
SRR035096.31650
454 Sequencing (SRP001817)
294
222
-
Val
CAC
[SRA]
>SRA1050859
SRR035096.33692
454 Sequencing (SRP001817)
359
287
-
Val
CAC
[SRA]
>SRA1050991
SRR035096.67070
454 Sequencing (SRP001817)
281
353
+
Val
CAC
[SRA]
>SRA1051003
SRR035096.68257
454 Sequencing (SRP001817)
125
53
-
Val
CAC
[SRA]
>SRA1051019
SRR035096.69983
454 Sequencing (SRP001817)
330
402
+
Val
CAC
[SRA]
>SRA1051046
SRR035096.75217
454 Sequencing (SRP001817)
330
402
+
Val
CAC
[SRA]
>SRA1051097
SRR035096.84649
454 Sequencing (SRP001817)
188
116
-
Val
CAC
[SRA]
>SRA1051146
SRR035096.94710
454 Sequencing (SRP001817)
127
55
-
Val
CAC
[SRA]
>SRA1051170
SRR035096.101185
454 Sequencing (SRP001817)
63
135
+
Val
CAC
[SRA]
>SRA1051255
SRR035096.121229
454 Sequencing (SRP001817)
295
223
-
Val
CAC
[SRA]
>SRA1051278
SRR035096.127483
454 Sequencing (SRP001817)
145
73
-
Val
CAC
[SRA]
>SRA1051311
SRR035096.135275
454 Sequencing (SRP001817)
219
291
+
Val
CAC
[SRA]
>WENV074520
AACY023980842
Marine microbial communities from Global Ocean Sampling (GOS)
467
392
-
Val
CAC
[ENA]
Identical group No.593613 (2 seq.)
>SRA1026866
SRR035086.15660
454 Sequencing (SRP001807)
122
194
+
Val
CAC
[SRA]
>SRA1026894
SRR035086.22878
454 Sequencing (SRP001807)
123
195
+
Val
CAC
[SRA]
Identical group No.593642 (1 seq.)
>SRA1028042
SRR035086.245923
454 Sequencing (SRP001807)
418
346
-
Val
CAC
[SRA]
Identical group No.654430 (42 seq.)
>C171072605
CP018091
Cyanobacteriota
Synechococcus sp. SynAce01 [CP018091]
618408
618337
-
Val
CAC
-
¡û
>C171128286
LT578417
Cyanobacteriota
Cyanobium sp. NIES-981 [LT578417]
1173528
1173599
+
Val
CAC
-
¡û
>C025240
CT978603
Cyanobacteriota
Synechococcus sp. RCC307 [CT978603]
634416
634345
-
Val
CAC
[Ensembl]
¡û
>w013577
AANO01000005
Cyanobacteriota
Synechococcus sp. WH 5701 [AANO]
9844
9770
-
Val
CAC
[ENA]
¡û
>WENV180357680
OBNN01063782
[OBNN] marine metagenome; Coastal water
51
122
+
Val
CAC
[ENA]
¢þ
>WENV180363831
OBNZ01010859
[OBNZ] marine metagenome; ENVO:00002010
368
297
-
Val
CAC
[ENA]
¢þ
>WENV180377551
OBON01043277
[OBON] marine metagenome; sea water
237
166
-
Val
CAC
[ENA]
¢þ
>WENV181367877
OFQD01003427
[OFQD] freshwater metagenome; Freshwater Lake
602
674
+
Val
CAC
[ENA]
¢þ
>WENV181384875
OFRI01017953
[OFRI] wastewater metagenome; Exp Tend VB 90WW
316
387
+
Val
CAC
[ENA]
¢þ
>W08011025
ABSE01000010
Cyanobacteriota
Cyanobium sp. PCC 7001 [ABSE]
344265
344336
+
Val
CAC
[ENA]
¡û
>WENV170119642
CENJ01157259
[CENJ] marine metagenome genome assembly TARA_009_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
351
425
+
Val
CAC
[ENA]
¢þ
>WENV170133902
CENU01060923
[CENU] marine metagenome genome assembly TARA_025_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3230
3156
-
Val
CAC
[ENA]
¢þ
>WENV170615013
FUWD012846323
[FUWD] metagenome; unknown
478
407
-
Val
CAC
[ENA]
¢þ
>WENV170622365
FUWD013099940
[FUWD] metagenome; unknown
690
761
+
Val
CAC
[ENA]
¢þ
>WENV170630583
FUWD013314372
[FUWD] metagenome; unknown
690
761
+
Val
CAC
[ENA]
¢þ
>WENV170769480
LXNH01056003
[LXNH] seawater metagenome; marine seawater
604
678
+
Val
CAC
[ENA]
¢þ
>WENV170808645
MDSW01118763
[MDSW] marine metagenome; seawater
2482
2410
-
Val
CAC
[ENA]
¢þ
>WENV021828
AACY020600387
Marine microbial communities from Global Ocean Sampling (GOS)
185
111
-
Val
CAC
[ENA]
>W141712583
JMRP01000038
Cyanobacteriota
Cyanobium sp. CACIAM 14 [JMRP]
26686
26615
-
Val
CAC
[ENA]
¡û
>W1911176856
NQKW01000002
Cyanobacteriota
Synechococcus sp. 1G10 [NQKW]
213670
213599
-
Val
CAC
[ENA]
¡û
>W1911176943
NQKY01000004
Cyanobacteriota
Synechococcus sp. BO 8801 [NQKY]
150227
150298
+
Val
CAC
[ENA]
¡û
>W1911176990
NQKZ01000004
Cyanobacteriota
Synechococcus sp. 8F6 [NQKZ]
79421
79350
-
Val
CAC
[ENA]
¡û
>W1911177023
NQLA01000003
Cyanobacteriota
Vulcanococcus limneticus LL [NQLA]
113848
113919
+
Val
CAC
[ENA]
¡û
>W1911638485
PVWP01000003
Cyanobacteriota
Aphanothece minutissima minutissima CCALA 015 [PVWP]
236206
236135
-
Val
CAC
[ENA]
¡û
>W1810389433
PXXO01000001
Cyanobacteriota
Cyanobium usitatum str. Tous [PXXO]
92960
92889
-
Val
CAC
[ENA]
¡û
>SRA1027257
SRR035086.91354
454 Sequencing (SRP001807)
137
208
+
Val
CAC
[SRA]
>SRA1027828
SRR035086.202430
454 Sequencing (SRP001807)
168
239
+
Val
CAC
[SRA]
>SRA1027888
SRR035086.212635
454 Sequencing (SRP001807)
137
208
+
Val
CAC
[SRA]
>SRA1029339
SRR035087.111440
454 Sequencing (SRP001808)
29
100
+
Val
CAC
[SRA]
>SRA1034294
SRR035089.51207
454 Sequencing (SRP001810)
267
338
+
Val
CAC
[SRA]
>SRA1051673
SRR035098.56187
454 Sequencing (SRP001819)
87
16
-
Val
CAC
[SRA]
>SRA1052298
SRR035098.177103
454 Sequencing (SRP001819)
116
187
+
Val
CAC
[SRA]
>SRA1052325
SRR035098.182994
454 Sequencing (SRP001819)
207
136
-
Val
CAC
[SRA]
>SRA1052854
SRR035098.285965
454 Sequencing (SRP001819)
261
190
-
Val
CAC
[SRA]
>SRA1053533
SRR035098.429890
454 Sequencing (SRP001819)
90
19
-
Val
CAC
[SRA]
>SRA1053683
SRR035098.467685
454 Sequencing (SRP001819)
90
19
-
Val
CAC
[SRA]
>W10120599
ADXM01000068
Cyanobacteriota
Synechococcus sp. CB0205 [ADXM]
31632
31704
+
Val
CAC
[ENA]
¡û
>W11127343
ADXM01000068
Cyanobacteriota
Synechococcus sp. CB0205 [ADXM]
31632
31704
+
Val
CAC
[ENA]
¡û
>W1511679496
LFEK01000110
Cyanobacteriota
Synechococcus sp. GFB01 [LFEK]
56817
56888
+
Val
CAC
[ENA]
¡û
>C131003914
CP003495
Cyanobacteriota
Cyanobium gracile PCC 6307 [CP003495]
3155925
3155854
-
Val
CAC
[Ensembl]
¡û
>W1610626659
LICO01000147
Cyanobacteriota
cyanobacterium BACL30 MAG-120619-bin27 [LICO]
381
452
+
Val
CAC
[ENA]
¡û
>W1710757786
LICO01000147
Cyanobacteriota
cyanobacterium BACL30 MAG-120619-bin27 [LICO]
381
452
+
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK