tRNA genes clustered and arranged according to each identical group

454 Sequencing (SRP001807)

Anticodon = CCG

HIT: 5 Group(s).
Download Sequence Representative sequence of each cluster
View ClustalW result
Sort by Identical group No. Sort by the number of tRNAs in the Identical group
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.261005 (1 seq.)
>SRA1026897 SRR035086.24078 454 Sequencing (SRP001807) 181 107 - Arg CCG [SRA]
Identical group No.279253 (7 seq.)
>w027462 ABCE01000060 Planctomycetota Gimesia maris DSM 8797 [ABCE] 17279 17203 - Arg CCG [ENA]
>WENV170014941 AZIC01004874 [AZIC] marine sediment metagenome; sample MGS-MES from oil contaminated site at the harbour of Messina (Sicily, Italy) 5137 5064 - Arg CCG [ENA]
>WENV170121144 CENL01054026 [CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 297915 297988 + Arg CCG [ENA]
>WENV170605063 FUWD010446136 [FUWD] metagenome; unknown 100 173 + Arg CCG [ENA]
>WENV170668354 LADL02003220 [LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole 5582 5509 - Arg CCG [ENA]
>SRA1027258 SRR035086.91433 454 Sequencing (SRP001807) 292 219 - Arg CCG [SRA]
>SRA1027408 SRR035086.120212 454 Sequencing (SRP001807) 110 183 + Arg CCG [SRA]
Identical group No.333277 (23 seq.)
>C171072580 CP018091 Cyanobacteriota Synechococcus sp. SynAce01 [CP018091] 1731605 1731678 + Arg CCG -
>WENV012956 AACY020354630 Marine microbial communities from Global Ocean Sampling (GOS) 524 602 + Arg CCG [ENA]
>WENV170118089 CENJ01044701 [CENJ] marine metagenome genome assembly TARA_009_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1125 1050 - Arg CCG [ENA]
>WENV170133702 CENU01044888 [CENU] marine metagenome genome assembly TARA_025_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 13845 13770 - Arg CCG [ENA]
>WENV170473881 CEVH01080677 [CEVH] marine metagenome genome assembly TARA_141_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 707 632 - Arg CCG [ENA]
>WENV170614387 FUWD012832439 [FUWD] metagenome; unknown 3708 3781 + Arg CCG [ENA]
>WENV170769227 LXNH01046754 [LXNH] seawater metagenome; marine seawater 159 84 - Arg CCG [ENA]
>WENV170799987 MDSV01222562 [MDSV] marine metagenome; seawater 1628 1703 + Arg CCG [ENA]
>WENV170802344 MDSW01011881 [MDSW] marine metagenome; seawater 2882 2809 - Arg CCG [ENA]
>WENV170838907 MDSZ01176298 [MDSZ] marine metagenome; seawater 4866 4791 - Arg CCG [ENA]
>WENV170849506 MDTA01097076 [MDTA] marine metagenome; seawater 579 504 - Arg CCG [ENA]
>WENV170869601 MDTB01178783 [MDTB] marine metagenome; seawater 1117 1042 - Arg CCG [ENA]
>W1911176926 NQKX01000010 Cyanobacteriota Synechococcus sp. MW101C3 [NQKX] 57860 57786 - Arg CCG [ENA]
>C151009071 CP006270 Cyanobacteriota Synechococcus sp. KORDI-49 [CP006270] 2019424 2019499 + Arg CCG [Ensembl]
>SRA1027078 SRR035086.58345 454 Sequencing (SRP001807) 219 146 - Arg CCG [SRA]
>SRA1028027 SRR035086.240365 454 Sequencing (SRP001807) 298 371 + Arg CCG [SRA]
>SRA1052027 SRR035098.126598 454 Sequencing (SRP001819) 121 48 - Arg CCG [SRA]
>SRA1052672 SRR035098.250575 454 Sequencing (SRP001819) 205 278 + Arg CCG [SRA]
>SRA1052709 SRR035098.256047 454 Sequencing (SRP001819) 137 210 + Arg CCG [SRA]
>SRA1053244 SRR035098.367169 454 Sequencing (SRP001819) 184 111 - Arg CCG [SRA]
>SRA1053529 SRR035098.427807 454 Sequencing (SRP001819) 183 110 - Arg CCG [SRA]
>SRA1053723 SRR035098.477245 454 Sequencing (SRP001819) 183 110 - Arg CCG [SRA]
>SRA1053802 SRR035098.499583 454 Sequencing (SRP001819) 10 83 + Arg CCG [SRA]
Identical group No.398889 (1 seq.)
>SRA1028755 SRR035086.426029 454 Sequencing (SRP001807) 84 10 - Arg CCG [SRA]
Identical group No.476573 (28 seq.)
>WENV180038597 LLBY010000546 [LLBY] soil metagenome; soil from tomato rhizosphere 50575 50649 + Arg CCG [ENA]
>WENV180041027 LLBZ010035765 [LLBZ] soil metagenome; soil from tomato rhizosphere 3416 3490 + Arg CCG [ENA]
>WENV180294567 OBIY01255793 [OBIY] beach sand metagenome; beach sand 68 142 + Arg CCG [ENA]
>WENV180309836 OBJS01054318 [OBJS] beach sand metagenome; beach sand 318 390 + Arg CCG [ENA]
>WENV180591182 OCOV01002748 [OCOV] marine metagenome; ENVO:01000301 539 467 - Arg CCG [ENA]
>WENV181162704 OEIO01007761 [OEIO] marine metagenome; sea ice 829 901 + Arg CCG [ENA]
>WENV183616264 OOEC01251966 [OOEC] marine metagenome; sea ice 4 76 + Arg CCG [ENA]
>WENV183617418 OOEE01243265 [OOEE] marine metagenome; sea ice 153 225 + Arg CCG [ENA]
>WENV183621336 OOFT01053785 [OOFT] marine metagenome; sea ice 482 409 - Arg CCG [ENA]
>WENV183621452 OOFU01001318 [OOFU] marine metagenome; sea ice 743 671 - Arg CCG [ENA]
>WENV183623311 OOFX01070470 [OOFX] marine metagenome; sea ice 7 79 + Arg CCG [ENA]
>WENV183623496 OOGA01005079 [OOGA] marine metagenome; sea ice 693 621 - Arg CCG [ENA]
>WENV183625436 OOGF01030349 [OOGF] marine metagenome; seawater 458 532 + Arg CCG [ENA]
>WENV183628219 OOGN01000063 [OOGN] marine metagenome; sea ice 1128 1200 + Arg CCG [ENA]
>WENV183628441 OOGN01050130 [OOGN] marine metagenome; sea ice 479 407 - Arg CCG [ENA]
>WENV183628674 OOGO01007014 [OOGO] marine metagenome; sea ice 840 912 + Arg CCG [ENA]
>WENV183630983 OOGU01014117 [OOGU] marine metagenome; sea ice 984 1056 + Arg CCG [ENA]
>WENV170024362 BCQL01047908 [BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa 5 77 + Arg CCG [ENA]
>WENV170275848 CERM01221817 [CERM] marine metagenome genome assembly TARA_067_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 726 654 - Arg CCG [ENA]
>WENV170537048 CEWP01346147 [CEWP] marine metagenome genome assembly TARA_067_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 676 748 + Arg CCG [ENA]
>WENV170569213 FLMP01149784 [FLMP] seawater metagenome; seawater 528 456 - Arg CCG [ENA]
>WENV170608363 FUWD010927542 [FUWD] metagenome; unknown 74 146 + Arg CCG [ENA]
>WENV170639217 JFJP01001701 [JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink 14913 14985 + Arg CCG [ENA]
>WENV170639263 JFJP01001719 [JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink 246 318 + Arg CCG [ENA]
>CHL1810002660 GU591328 Alveolata Kryptoperidinium foliaceum CCMP1326 (GU591328) 32068 32140 + Arg CCG [ENA]
>CHL1810005298 JQ088178 Stramenopiles Ulnaria acus (JQ088178) 28976 29048 + Arg CCG [ENA]
>CHL1810059512 MG755803 Stramenopiles Psammoneis obaidii (MG755803) 44587 44515 - Arg CCG [ENA]
>SRA1028625 SRR035086.377554 454 Sequencing (SRP001807) 144 72 - Arg CCG [SRA]
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

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