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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001807)
Anticodon = CGC
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.453691 (24 seq.)
>C171072597
CP018091
Cyanobacteriota
Synechococcus sp. SynAce01 [CP018091]
1645677
1645603
-
Ala
CGC
-
¡û
>WENV180366570
OBOD01045463
[OBOD] marine metagenome; ENVO:00002010
378
304
-
Ala
CGC
[ENA]
¢þ
>WENV170400872
CEUE01157349
[CEUE] marine metagenome genome assembly TARA_133_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
149
223
+
Ala
CGC
[ENA]
¢þ
>WENV170533142
CEWO01100313
[CEWO] marine metagenome genome assembly TARA_145_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
242
168
-
Ala
CGC
[ENA]
¢þ
>WENV170614692
FUWD012839547
[FUWD] metagenome; unknown
9300
9374
+
Ala
CGC
[ENA]
¢þ
>W1810389456
PXXO01000008
Cyanobacteriota
Cyanobium usitatum str. Tous [PXXO]
112230
112158
-
Ala
CGC
[ENA]
¡û
>W1810529759
QCVA01000013
Cyanobacteriota
Synechococcus sp. AG-683-A22 [QCVA]
8962
8889
-
Ala
CGC
[ENA]
¡û
>W1810529784
QCVB01000104
Cyanobacteriota
Synechococcus sp. AG-683-B03 [QCVB]
1281
1355
+
Ala
CGC
[ENA]
¡û
>W1810529840
QCVD01000037
Cyanobacteriota
Synechococcus sp. AG-683-C23 [QCVD]
9382
9455
+
Ala
CGC
[ENA]
¡û
>W1810529992
QCVM01000023
Cyanobacteriota
Synechococcus sp. AG-686-B21 [QCVM]
4485
4559
+
Ala
CGC
[ENA]
¡û
>W1810530016
QCVN01000046
Cyanobacteriota
Synechococcus sp. AG-686-C21 [QCVN]
1473
1547
+
Ala
CGC
[ENA]
¡û
>SRA1027813
SRR035086.199157
454 Sequencing (SRP001807)
86
160
+
Ala
CGC
[SRA]
>SRA1028238
SRR035086.281002
454 Sequencing (SRP001807)
364
438
+
Ala
CGC
[SRA]
>SRA1035384
SRR035089.294654
454 Sequencing (SRP001810)
361
287
-
Ala
CGC
[SRA]
>SRA1048468
SRR035094.180920
454 Sequencing (SRP001815)
386
312
-
Ala
CGC
[SRA]
>SRA1051739
SRR035098.67882
454 Sequencing (SRP001819)
188
114
-
Ala
CGC
[SRA]
>SRA1052467
SRR035098.209230
454 Sequencing (SRP001819)
306
380
+
Ala
CGC
[SRA]
>SRA1052790
SRR035098.275929
454 Sequencing (SRP001819)
94
168
+
Ala
CGC
[SRA]
>SRA1052840
SRR035098.283583
454 Sequencing (SRP001819)
85
11
-
Ala
CGC
[SRA]
>SRA1053020
SRR035098.318820
454 Sequencing (SRP001819)
85
159
+
Ala
CGC
[SRA]
>SRA1053198
SRR035098.360388
454 Sequencing (SRP001819)
94
168
+
Ala
CGC
[SRA]
>SRA1053855
SRR035098.517092
454 Sequencing (SRP001819)
160
86
-
Ala
CGC
[SRA]
>W1610626654
LICO01000129
Cyanobacteriota
cyanobacterium BACL30 MAG-120619-bin27 [LICO]
3361
3289
-
Ala
CGC
[ENA]
¡û
>W1710757781
LICO01000129
Cyanobacteriota
cyanobacterium BACL30 MAG-120619-bin27 [LICO]
3361
3289
-
Ala
CGC
[ENA]
¡û
Identical group No.711251 (14 seq.)
>WENV170617456
FUWD012926983
[FUWD] metagenome; unknown
2558
2631
+
Ala
CGC
[ENA]
¢þ
>SRA1026842
SRR035086.7185
454 Sequencing (SRP001807)
308
381
+
Ala
CGC
[SRA]
>SRA1026907
SRR035086.25761
454 Sequencing (SRP001807)
236
163
-
Ala
CGC
[SRA]
>SRA1027099
SRR035086.62978
454 Sequencing (SRP001807)
155
228
+
Ala
CGC
[SRA]
>SRA1027197
SRR035086.79429
454 Sequencing (SRP001807)
78
151
+
Ala
CGC
[SRA]
>SRA1027354
SRR035086.111151
454 Sequencing (SRP001807)
28
101
+
Ala
CGC
[SRA]
>SRA1027480
SRR035086.131972
454 Sequencing (SRP001807)
346
273
-
Ala
CGC
[SRA]
>SRA1027496
SRR035086.135110
454 Sequencing (SRP001807)
116
43
-
Ala
CGC
[SRA]
>SRA1027886
SRR035086.212355
454 Sequencing (SRP001807)
138
211
+
Ala
CGC
[SRA]
>SRA1027961
SRR035086.228048
454 Sequencing (SRP001807)
327
400
+
Ala
CGC
[SRA]
>SRA1028659
SRR035086.390967
454 Sequencing (SRP001807)
56
129
+
Ala
CGC
[SRA]
>SRA1028762
SRR035086.427788
454 Sequencing (SRP001807)
176
103
-
Ala
CGC
[SRA]
>SRA1050898
SRR035096.45954
454 Sequencing (SRP001817)
46
119
+
Ala
CGC
[SRA]
>SRA1050932
SRR035096.54428
454 Sequencing (SRP001817)
52
125
+
Ala
CGC
[SRA]
Identical group No.739333 (3 seq.)
>SRA1027022
SRR035086.45070
454 Sequencing (SRP001807)
122
193
+
Ala
CGC
[SRA]
>SRA1027084
SRR035086.60034
454 Sequencing (SRP001807)
122
193
+
Ala
CGC
[SRA]
>SRA1027381
SRR035086.115728
454 Sequencing (SRP001807)
122
193
+
Ala
CGC
[SRA]
Identical group No.739339 (3 seq.)
>SRA1027202
SRR035086.81331
454 Sequencing (SRP001807)
224
153
-
Ala
CGC
[SRA]
>SRA1027544
SRR035086.144935
454 Sequencing (SRP001807)
223
152
-
Ala
CGC
[SRA]
>SRA1028564
SRR035086.359057
454 Sequencing (SRP001807)
434
363
-
Ala
CGC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK