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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001807)
Anticodon = CGT
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.453899 (10 seq.)
>WENV180212270
OBAN01002756
[OBAN] marine metagenome; ENVO 00002150
289
214
-
Thr
CGT
[ENA]
¢þ
>WENV180362306
OBNW01107886
[OBNW] marine metagenome; ENVO:00002010, 'SEA WATER
204
279
+
Thr
CGT
[ENA]
¢þ
>WENV180376483
OBOM01014097
[OBOM] marine metagenome; Seawater
227
302
+
Thr
CGT
[ENA]
¢þ
>WENV180391443
OBPN01001652
[OBPN] marine metagenome; seawater
780
705
-
Thr
CGT
[ENA]
¢þ
>WENV170600134
FUWD010109886
[FUWD] metagenome; unknown
68
143
+
Thr
CGT
[ENA]
¢þ
>WENV170625781
FUWD013205611
[FUWD] metagenome; unknown
226
301
+
Thr
CGT
[ENA]
¢þ
>WENV170634003
FUWD013407443
[FUWD] metagenome; unknown
226
301
+
Thr
CGT
[ENA]
¢þ
>SRA1028591
SRR035086.367432
454 Sequencing (SRP001807)
266
191
-
Thr
CGT
[SRA]
>SRA1036726
SRR035089.595293
454 Sequencing (SRP001810)
321
396
+
Thr
CGT
[SRA]
>SRA1053544
SRR035098.433637
454 Sequencing (SRP001819)
136
61
-
Thr
CGT
[SRA]
Identical group No.474427 (82 seq.)
>WENV180114092
OAPR01148672
[OAPR] marine metagenome; seawater
356
281
-
Thr
CGT
[ENA]
¢þ
>WENV181321994
OFKO01008388
[OFKO] marine metagenome; seawater
35
110
+
Thr
CGT
[ENA]
¢þ
>WENV181393239
OFRX01083034
[OFRX] seawater metagenome; seawater
298
373
+
Thr
CGT
[ENA]
¢þ
>WENV182540385
OJAJ01000072
[OJAJ] seawater metagenome; Sea water
1691
1766
+
Thr
CGT
[ENA]
¢þ
>WENV182540805
OJAQ01000002
[OJAQ] seawater metagenome; Sea water
3228
3303
+
Thr
CGT
[ENA]
¢þ
>WENV182542739
OJAZ01001391
[OJAZ] seawater metagenome; Sea water
5491
5416
-
Thr
CGT
[ENA]
¢þ
>WENV182544240
OJBF01000058
[OJBF] seawater metagenome; Sea water
8071
7996
-
Thr
CGT
[ENA]
¢þ
>WENV182544432
OJBG01001105
[OJBG] seawater metagenome; Sea water
676
751
+
Thr
CGT
[ENA]
¢þ
>WENV182544977
OJBL01001412
[OJBL] seawater metagenome; Sea water
1110
1185
+
Thr
CGT
[ENA]
¢þ
>WENV182545763
OJBN01022568
[OJBN] seawater metagenome; Sea water
542
467
-
Thr
CGT
[ENA]
¢þ
>WENV182548472
OJBW01000416
[OJBW] seawater metagenome; Sea water
558
633
+
Thr
CGT
[ENA]
¢þ
>WENV182550118
OJBZ01003862
[OJBZ] seawater metagenome; Sea water
2776
2851
+
Thr
CGT
[ENA]
¢þ
>WENV182552640
OJCN01000439
[OJCN] seawater metagenome; Sea water
363
438
+
Thr
CGT
[ENA]
¢þ
>WENV182553187
OJCR01000340
[OJCR] seawater metagenome; Sea water
13258
13333
+
Thr
CGT
[ENA]
¢þ
>WENV182554052
OJCT01000089
[OJCT] seawater metagenome; Sea water
4840
4765
-
Thr
CGT
[ENA]
¢þ
>WENV182556513
OJDG01013715
[OJDG] seawater metagenome; Sea water
646
721
+
Thr
CGT
[ENA]
¢þ
>WENV182557167
OJDI01001767
[OJDI] seawater metagenome; Sea water
3977
3902
-
Thr
CGT
[ENA]
¢þ
>WENV182558528
OJDM01011075
[OJDM] seawater metagenome; Sea water
793
718
-
Thr
CGT
[ENA]
¢þ
>WENV182561573
OJDX01000006
[OJDX] seawater metagenome; Sea water
35482
35407
-
Thr
CGT
[ENA]
¢þ
>WENV182561910
OJDY01000006
[OJDY] seawater metagenome; Sea water
21612
21687
+
Thr
CGT
[ENA]
¢þ
>WENV182562640
OJEA01000003
[OJEA] seawater metagenome; Sea water
48968
49043
+
Thr
CGT
[ENA]
¢þ
>WENV182563035
OJEB01000006
[OJEB] seawater metagenome; Sea water
43816
43741
-
Thr
CGT
[ENA]
¢þ
>WENV182564013
OJEE01000001
[OJEE] seawater metagenome; Sea water
45749
45674
-
Thr
CGT
[ENA]
¢þ
>WENV182569227
OJEY01003037
[OJEY] seawater metagenome; Sea water
78
3
-
Thr
CGT
[ENA]
¢þ
>WENV182569703
OJFB01000050
[OJFB] seawater metagenome; Sea water
4822
4897
+
Thr
CGT
[ENA]
¢þ
>WENV182571183
OJFG01001342
[OJFG] seawater metagenome; Sea water
3285
3210
-
Thr
CGT
[ENA]
¢þ
>WENV182573740
OJFP01021078
[OJFP] seawater metagenome; Sea water
789
714
-
Thr
CGT
[ENA]
¢þ
>WENV182574522
OJFS01000004
[OJFS] seawater metagenome; Sea water
45524
45449
-
Thr
CGT
[ENA]
¢þ
>WENV182576691
OJFY01001635
[OJFY] seawater metagenome; Sea water
708
633
-
Thr
CGT
[ENA]
¢þ
>WENV182577925
OJGM01000031
[OJGM] seawater metagenome; Sea water
19323
19398
+
Thr
CGT
[ENA]
¢þ
>WENV182580617
OJGW01004956
[OJGW] seawater metagenome; Sea water
1915
1990
+
Thr
CGT
[ENA]
¢þ
>WENV182582087
OJHA01000006
[OJHA] seawater metagenome; Sea water
22853
22928
+
Thr
CGT
[ENA]
¢þ
>WENV182582407
OJHB01000049
[OJHB] seawater metagenome; Sea water
8768
8693
-
Thr
CGT
[ENA]
¢þ
>WENV182583184
OJHD01000898
[OJHD] seawater metagenome; Sea water
3598
3673
+
Thr
CGT
[ENA]
¢þ
>WENV182584684
OJHG01005276
[OJHG] seawater metagenome; Sea water
427
352
-
Thr
CGT
[ENA]
¢þ
>WENV182586732
OJHK01003934
[OJHK] seawater metagenome; Sea water
891
966
+
Thr
CGT
[ENA]
¢þ
>WENV182587537
OJHN01000009
[OJHN] seawater metagenome; Sea water
4181
4256
+
Thr
CGT
[ENA]
¢þ
>WENV182592318
OJIR01000009
[OJIR] seawater metagenome; Sea water
45835
45760
-
Thr
CGT
[ENA]
¢þ
>WENV183054499
OLGU01000003
[OLGU] seawater metagenome; Sea water
128156
128231
+
Thr
CGT
[ENA]
¢þ
>WENV183055033
OLGW01001376
[OLGW] seawater metagenome; Sea water
759
684
-
Thr
CGT
[ENA]
¢þ
>WENV183059082
OLHS01003235
[OLHS] seawater metagenome; Sea water
133
58
-
Thr
CGT
[ENA]
¢þ
>WENV183059187
OLHU01000001
[OLHU] seawater metagenome; Sea water
128358
128433
+
Thr
CGT
[ENA]
¢þ
>WENV183060190
OLHX01000047
[OLHX] seawater metagenome; Sea water
9417
9342
-
Thr
CGT
[ENA]
¢þ
>WENV183061043
OLHY01032573
[OLHY] seawater metagenome; Sea water
308
383
+
Thr
CGT
[ENA]
¢þ
>WENV183629610
OOGP01086549
[OOGP] marine metagenome; seawater
298
373
+
Thr
CGT
[ENA]
¢þ
>WENV170568196
FLMP01021615
[FLMP] seawater metagenome; seawater
1543
1618
+
Thr
CGT
[ENA]
¢þ
>WENV170600120
FUWD010108602
[FUWD] metagenome; unknown
663
590
-
Thr
CGT
[ENA]
¢þ
>WENV170616595
FUWD012893243
[FUWD] metagenome; unknown
160
85
-
Thr
CGT
[ENA]
¢þ
>WENV170619688
FUWD013019052
[FUWD] metagenome; unknown
214
139
-
Thr
CGT
[ENA]
¢þ
>WENV170620384
FUWD013030779
[FUWD] metagenome; unknown
2597
2670
+
Thr
CGT
[ENA]
¢þ
>WENV170624323
FUWD013179764
[FUWD] metagenome; unknown
1233
1308
+
Thr
CGT
[ENA]
¢þ
>WENV170624324
FUWD013179765
[FUWD] metagenome; unknown
308
383
+
Thr
CGT
[ENA]
¢þ
>WENV170624747
FUWD013186080
[FUWD] metagenome; unknown
613
538
-
Thr
CGT
[ENA]
¢þ
>WENV170626578
FUWD013225830
[FUWD] metagenome; unknown
700
775
+
Thr
CGT
[ENA]
¢þ
>WENV170627203
FUWD013232002
[FUWD] metagenome; unknown
389
464
+
Thr
CGT
[ENA]
¢þ
>WENV170627807
FUWD013237473
[FUWD] metagenome; unknown
214
139
-
Thr
CGT
[ENA]
¢þ
>WENV170629408
FUWD013269716
[FUWD] metagenome; unknown
45236
45163
-
Thr
CGT
[ENA]
¢þ
>WENV170632610
FUWD013385052
[FUWD] metagenome; unknown
308
383
+
Thr
CGT
[ENA]
¢þ
>WENV170632611
FUWD013385053
[FUWD] metagenome; unknown
389
464
+
Thr
CGT
[ENA]
¢þ
>WENV170633026
FUWD013390224
[FUWD] metagenome; unknown
613
538
-
Thr
CGT
[ENA]
¢þ
>WENV170952961
MEHZ011622507
[MEHZ] marine metagenome; marine surface water
13314
13389
+
Thr
CGT
[ENA]
¢þ
>SRA1018078
SRR035082.236652
454 Sequencing (SRP001803)
186
111
-
Thr
CGT
[SRA]
>SRA1023899
SRR035084.203679
454 Sequencing (SRP001805)
346
271
-
Thr
CGT
[SRA]
>SRA1024261
SRR035084.285256
454 Sequencing (SRP001805)
356
281
-
Thr
CGT
[SRA]
>SRA1024734
SRR035084.389800
454 Sequencing (SRP001805)
347
272
-
Thr
CGT
[SRA]
>SRA1024776
SRR035084.398663
454 Sequencing (SRP001805)
356
281
-
Thr
CGT
[SRA]
>SRA1024888
SRR035084.429326
454 Sequencing (SRP001805)
129
54
-
Thr
CGT
[SRA]
>SRA1028664
SRR035086.392260
454 Sequencing (SRP001807)
18
93
+
Thr
CGT
[SRA]
>SRA1032088
SRR035087.550399
454 Sequencing (SRP001808)
367
442
+
Thr
CGT
[SRA]
>SRA1045619
SRR035093.134641
454 Sequencing (SRP001814)
58
133
+
Thr
CGT
[SRA]
>SRA1046086
SRR035093.233281
454 Sequencing (SRP001814)
357
430
+
Thr
CGT
[SRA]
>SRA1046443
SRR035093.308006
454 Sequencing (SRP001814)
216
291
+
Thr
CGT
[SRA]
>SRA1046612
SRR035093.343929
454 Sequencing (SRP001814)
319
394
+
Thr
CGT
[SRA]
>SRA1046720
SRR035093.370225
454 Sequencing (SRP001814)
434
506
+
Thr
CGT
[SRA]
>SRA1047471
SRR035093.548495
454 Sequencing (SRP001814)
194
119
-
Thr
CGT
[SRA]
>SRA1047513
SRR035093.561931
454 Sequencing (SRP001814)
153
228
+
Thr
CGT
[SRA]
>SRA1050990
SRR035096.66993
454 Sequencing (SRP001817)
242
167
-
Thr
CGT
[SRA]
>SRA1051669
SRR035098.55362
454 Sequencing (SRP001819)
35
110
+
Thr
CGT
[SRA]
>SRA1051896
SRR035098.98595
454 Sequencing (SRP001819)
35
110
+
Thr
CGT
[SRA]
>SRA1052476
SRR035098.211159
454 Sequencing (SRP001819)
160
85
-
Thr
CGT
[SRA]
>SRA1052948
SRR035098.306072
454 Sequencing (SRP001819)
226
301
+
Thr
CGT
[SRA]
>SRA1052984
SRR035098.312837
454 Sequencing (SRP001819)
35
110
+
Thr
CGT
[SRA]
Identical group No.593661 (1 seq.)
>SRA1028371
SRR035086.310418
454 Sequencing (SRP001807)
94
22
-
Thr
CGT
[SRA]
Identical group No.593674 (1 seq.)
>SRA1028698
SRR035086.402700
454 Sequencing (SRP001807)
234
309
+
Thr
CGT
[SRA]
Identical group No.710661 (3 seq.)
>WENV170605068
FUWD010447019
[FUWD] metagenome; unknown
5
78
+
Thr
CGT
[ENA]
¢þ
>WENV170619371
FUWD013011705
[FUWD] metagenome; unknown
5
78
+
Thr
CGT
[ENA]
¢þ
>SRA1028288
SRR035086.292773
454 Sequencing (SRP001807)
200
273
+
Thr
CGT
[SRA]
Identical group No.711253 (6 seq.)
>WENV170617463
FUWD012926983
[FUWD] metagenome; unknown
649
578
-
Thr
CGT
[ENA]
¢þ
>SRA1027072
SRR035086.57051
454 Sequencing (SRP001807)
224
153
-
Thr
CGT
[SRA]
>SRA1027541
SRR035086.144257
454 Sequencing (SRP001807)
272
343
+
Thr
CGT
[SRA]
>SRA1027685
SRR035086.172920
454 Sequencing (SRP001807)
447
376
-
Thr
CGT
[SRA]
>SRA1028133
SRR035086.265376
454 Sequencing (SRP001807)
279
350
+
Thr
CGT
[SRA]
>SRA1051169
SRR035096.101119
454 Sequencing (SRP001817)
145
74
-
Thr
CGT
[SRA]
Identical group No.739327 (1 seq.)
>SRA1026913
SRR035086.27997
454 Sequencing (SRP001807)
346
275
-
Thr
CGT
[SRA]
Identical group No.739329 (1 seq.)
>SRA1026937
SRR035086.30815
454 Sequencing (SRP001807)
173
244
+
Thr
CGT
[SRA]
Identical group No.739364 (1 seq.)
>SRA1027975
SRR035086.230827
454 Sequencing (SRP001807)
236
163
-
Thr
CGT
[SRA]
Identical group No.739368 (1 seq.)
>SRA1028018
SRR035086.238461
454 Sequencing (SRP001807)
261
334
+
Thr
CGT
[SRA]
Identical group No.739373 (1 seq.)
>SRA1028134
SRR035086.265626
454 Sequencing (SRP001807)
175
246
+
Thr
CGT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK