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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001807)
Anticodon = GGC
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.460695 (7 seq.)
>w027456
ABCE01000039
Planctomycetota
Gimesia maris DSM 8797 [ABCE]
33494
33571
+
Ala
GGC
[ENA]
¡û
>WENV183627719
OOGL01031850
[OOGL] marine metagenome; sea ice
427
354
-
Ala
GGC
[ENA]
¢þ
>WENV170014953
AZIC01005183
[AZIC] marine sediment metagenome; sample MGS-MES from oil contaminated site at the harbour of Messina (Sicily, Italy)
12351
12424
+
Ala
GGC
[ENA]
¢þ
>WENV170121091
CENL01049047
[CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
10611
10538
-
Ala
GGC
[ENA]
¢þ
>WENV170621939
FUWD013080192
[FUWD] metagenome; unknown
1048
1121
+
Ala
GGC
[ENA]
¢þ
>WENV170630135
FUWD013295548
[FUWD] metagenome; unknown
1048
1121
+
Ala
GGC
[ENA]
¢þ
>SRA1027524
SRR035086.141159
454 Sequencing (SRP001807)
416
489
+
Ala
GGC
[SRA]
Identical group No.466606 (3 seq.)
>WENV180116099
OAPT01128354
[OAPT] marine metagenome; seawater
33
108
+
Ala
GGC
[ENA]
¢þ
>WENV170350043
CETH01058688
[CETH] marine metagenome genome assembly TARA_122_DCM_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
346
421
+
Ala
GGC
[ENA]
¢þ
>SRA1027695
SRR035086.175925
454 Sequencing (SRP001807)
206
281
+
Ala
GGC
[SRA]
Identical group No.474450 (22 seq.)
>WENV180382260
OBOS01178960
[OBOS] marine metagenome; ENVO 00002150
100
175
+
Ala
GGC
[ENA]
¢þ
>WENV180393401
OBPQ01031483
[OBPQ] marine metagenome; polypropylene bottle
46
121
+
Ala
GGC
[ENA]
¢þ
>WENV181325627
OFLJ01009676
[OFLJ] seawater metagenome; seawater
650
575
-
Ala
GGC
[ENA]
¢þ
>WENV181392372
OFRW01037098
[OFRW] seawater metagenome; seawater
151
226
+
Ala
GGC
[ENA]
¢þ
>WENV182543091
OJBA01000018
[OJBA] seawater metagenome; Sea water
7258
7183
-
Ala
GGC
[ENA]
¢þ
>WENV182550333
OJCA01000263
[OJCA] seawater metagenome; Sea water
3006
3081
+
Ala
GGC
[ENA]
¢þ
>WENV182563420
OJEC01000097
[OJEC] seawater metagenome; Sea water
3807
3882
+
Ala
GGC
[ENA]
¢þ
>WENV182570240
OJFC01000318
[OJFC] seawater metagenome; Sea water
2903
2978
+
Ala
GGC
[ENA]
¢þ
>WENV182571466
OJFK01000040
[OJFK] seawater metagenome; Sea water
32090
32015
-
Ala
GGC
[ENA]
¢þ
>WENV182583815
OJHF01000023
[OJHF] seawater metagenome; Sea water
20393
20468
+
Ala
GGC
[ENA]
¢þ
>WENV183055796
OLHH01000385
[OLHH] seawater metagenome; Sea water
711
636
-
Ala
GGC
[ENA]
¢þ
>WENV183058468
OLHR01000173
[OLHR] seawater metagenome; Sea water
7630
7555
-
Ala
GGC
[ENA]
¢þ
>WENV183619485
OOFQ01009701
[OOFQ] marine metagenome; seawater
650
575
-
Ala
GGC
[ENA]
¢þ
>WENV183625278
OOGF01008832
[OOGF] marine metagenome; seawater
708
633
-
Ala
GGC
[ENA]
¢þ
>WENV183626730
OOGJ01021586
[OOGJ] marine metagenome; seawater
337
262
-
Ala
GGC
[ENA]
¢þ
>WENV183627102
OOGK01038680
[OOGK] marine metagenome; seawater
151
226
+
Ala
GGC
[ENA]
¢þ
>WENV170536052
CEWP01142739
[CEWP] marine metagenome genome assembly TARA_067_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
648
573
-
Ala
GGC
[ENA]
¢þ
>WENV170567739
FLMP01004628
[FLMP] seawater metagenome; seawater
3320
3395
+
Ala
GGC
[ENA]
¢þ
>WENV170875323
MDTC01019597
[MDTC] marine metagenome; seawater
7739
7664
-
Ala
GGC
[ENA]
¢þ
>WENV170941786
MDTG01366397
[MDTG] marine metagenome; seawater
3069
2994
-
Ala
GGC
[ENA]
¢þ
>WENV170952594
MEHZ011605653
[MEHZ] marine metagenome; marine surface water
5366
5291
-
Ala
GGC
[ENA]
¢þ
>SRA1027851
SRR035086.206696
454 Sequencing (SRP001807)
288
215
-
Ala
GGC
[SRA]
Identical group No.484737 (5 seq.)
>WENV170620214
FUWD013027454
[FUWD] metagenome; unknown
3905
3980
+
Ala
GGC
[ENA]
¢þ
>WENV170628350
FUWD013245232
[FUWD] metagenome; unknown
3905
3980
+
Ala
GGC
[ENA]
¢þ
>SRA1027377
SRR035086.114744
454 Sequencing (SRP001807)
263
188
-
Ala
GGC
[SRA]
>SRA1028616
SRR035086.376549
454 Sequencing (SRP001807)
213
138
-
Ala
GGC
[SRA]
>SRA1047152
SRR035093.470955
454 Sequencing (SRP001814)
316
391
+
Ala
GGC
[SRA]
Identical group No.548328 (10 seq.)
>WENV170557364
CXWL01025223
[CXWL] groundwater metagenome; biofilm material
635
562
-
Ala
GGC
[ENA]
¢þ
>WENV170611922
FUWD012446918
[FUWD] metagenome; unknown
176
249
+
Ala
GGC
[ENA]
¢þ
>WENV170956446
MJUP01008317
[MJUP] soil metagenome; viral particles from soil sample MGM
165
90
-
Ala
GGC
[ENA]
¢þ
>WENV170979459
MTKZ01091081
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1771
1698
-
Ala
GGC
[ENA]
¢þ
>SRA1026904
SRR035086.24817
454 Sequencing (SRP001807)
186
259
+
Ala
GGC
[SRA]
>SRA1027143
SRR035086.70859
454 Sequencing (SRP001807)
186
259
+
Ala
GGC
[SRA]
>SRA1027280
SRR035086.95649
454 Sequencing (SRP001807)
186
259
+
Ala
GGC
[SRA]
>SRA1027295
SRR035086.99601
454 Sequencing (SRP001807)
186
259
+
Ala
GGC
[SRA]
>SRA1027485
SRR035086.132672
454 Sequencing (SRP001807)
186
259
+
Ala
GGC
[SRA]
>C10110477
CP001848
Planctomycetota
Pirellula staleyi DSM 6068 [CP001848]
919352
919279
-
Ala
GGC
[Ensembl]
¡û
Identical group No.593630 (2 seq.)
>SRA1027573
SRR035086.150332
454 Sequencing (SRP001807)
374
449
+
Ala
GGC
[SRA]
>SRA1027926
SRR035086.219660
454 Sequencing (SRP001807)
374
449
+
Ala
GGC
[SRA]
Identical group No.593672 (1 seq.)
>SRA1028646
SRR035086.384559
454 Sequencing (SRP001807)
299
226
-
Ala
GGC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK