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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001807)
Anticodon = TAG
HIT:
21 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.27038 (1 seq.)
>SRA1027259
SRR035086.91569
454 Sequencing (SRP001807)
160
69
-
Leu
TAG
[SRA]
Identical group No.140948 (1 seq.)
>SRA1027593
SRR035086.154563
454 Sequencing (SRP001807)
97
183
+
Leu
TAG
[SRA]
Identical group No.140956 (1 seq.)
>SRA1028443
SRR035086.327403
454 Sequencing (SRP001807)
277
360
+
Leu
TAG
[SRA]
Identical group No.165734 (3 seq.)
>WENV170611934
FUWD012455485
[FUWD] metagenome; unknown
477
392
-
Leu
TAG
[ENA]
¢þ
>SRA1023597
SRR035084.134360
454 Sequencing (SRP001805)
49
134
+
Leu
TAG
[SRA]
>SRA1028113
SRR035086.261118
454 Sequencing (SRP001807)
488
403
-
Leu
TAG
[SRA]
Identical group No.169145 (3 seq.)
>SRA1023846
SRR035084.188616
454 Sequencing (SRP001805)
120
35
-
Leu
TAG
[SRA]
>SRA1027745
SRR035086.185025
454 Sequencing (SRP001807)
186
271
+
Leu
TAG
[SRA]
>SRA1028422
SRR035086.322711
454 Sequencing (SRP001807)
186
271
+
Leu
TAG
[SRA]
Identical group No.171757 (1 seq.)
>SRA1027159
SRR035086.72735
454 Sequencing (SRP001807)
246
330
+
Leu
TAG
[SRA]
Identical group No.181630 (3 seq.)
>w027464
ABCE01000084
Planctomycetota
Gimesia maris DSM 8797 [ABCE]
5841
5925
+
Leu
TAG
[ENA]
¡û
>WENV170014909
AZIC01004417
[AZIC] marine sediment metagenome; sample MGS-MES from oil contaminated site at the harbour of Messina (Sicily, Italy)
1570
1651
+
Leu
TAG
[ENA]
¢þ
>SRA1027127
SRR035086.67770
454 Sequencing (SRP001807)
159
240
+
Leu
TAG
[SRA]
Identical group No.186144 (9 seq.)
>WENV170627319
FUWD013232619
[FUWD] metagenome; unknown
82117
82201
+
Leu
TAG
[ENA]
¢þ
>SRA1025343
SRR035084.558208
454 Sequencing (SRP001805)
50
134
+
Leu
TAG
[SRA]
>SRA1028243
SRR035086.282510
454 Sequencing (SRP001807)
332
248
-
Leu
TAG
[SRA]
>SRA1046540
SRR035093.329267
454 Sequencing (SRP001814)
247
331
+
Leu
TAG
[SRA]
>SRA1050854
SRR035096.32598
454 Sequencing (SRP001817)
25
109
+
Leu
TAG
[SRA]
>SRA1051044
SRR035096.75149
454 Sequencing (SRP001817)
223
139
-
Leu
TAG
[SRA]
>SRA1051188
SRR035096.104239
454 Sequencing (SRP001817)
25
109
+
Leu
TAG
[SRA]
>SRA1052410
SRR035098.197520
454 Sequencing (SRP001819)
97
181
+
Leu
TAG
[SRA]
>SRA1052895
SRR035098.295651
454 Sequencing (SRP001819)
97
181
+
Leu
TAG
[SRA]
Identical group No.198183 (3 seq.)
>WENV170611933
FUWD012455387
[FUWD] metagenome; unknown
255
173
-
Leu
TAG
[ENA]
¢þ
>SRA1028104
SRR035086.259408
454 Sequencing (SRP001807)
266
184
-
Leu
TAG
[SRA]
>SRA1028702
SRR035086.403835
454 Sequencing (SRP001807)
101
183
+
Leu
TAG
[SRA]
Identical group No.198231 (10 seq.)
>C171072577
CP018091
Cyanobacteriota
Synechococcus sp. SynAce01 [CP018091]
1621496
1621578
+
Leu
TAG
-
¡û
>WENV170614693
FUWD012839550
[FUWD] metagenome; unknown
2399
2317
-
Leu
TAG
[ENA]
¢þ
>SRA1027045
SRR035086.51191
454 Sequencing (SRP001807)
166
248
+
Leu
TAG
[SRA]
>SRA1027180
SRR035086.75952
454 Sequencing (SRP001807)
320
402
+
Leu
TAG
[SRA]
>SRA1051730
SRR035098.65052
454 Sequencing (SRP001819)
253
335
+
Leu
TAG
[SRA]
>SRA1051879
SRR035098.92268
454 Sequencing (SRP001819)
197
279
+
Leu
TAG
[SRA]
>SRA1052029
SRR035098.127145
454 Sequencing (SRP001819)
342
260
-
Leu
TAG
[SRA]
>SRA1052803
SRR035098.278535
454 Sequencing (SRP001819)
253
335
+
Leu
TAG
[SRA]
>SRA1052963
SRR035098.308676
454 Sequencing (SRP001819)
253
335
+
Leu
TAG
[SRA]
>W1511679470
LFEK01000034
Cyanobacteriota
Synechococcus sp. GFB01 [LFEK]
16661
16577
-
Leu
TAG
[ENA]
¡û
Identical group No.198254 (5 seq.)
>WENV170620298
FUWD013029005
[FUWD] metagenome; unknown
3204
3288
+
Leu
TAG
[ENA]
¢þ
>WENV170628428
FUWD013246669
[FUWD] metagenome; unknown
3204
3288
+
Leu
TAG
[ENA]
¢þ
>SRA1027759
SRR035086.187845
454 Sequencing (SRP001807)
457
373
-
Leu
TAG
[SRA]
>SRA1027870
SRR035086.210191
454 Sequencing (SRP001807)
349
265
-
Leu
TAG
[SRA]
>SRA1027974
SRR035086.230449
454 Sequencing (SRP001807)
279
195
-
Leu
TAG
[SRA]
Identical group No.206663 (1 seq.)
>SRA1027503
SRR035086.137275
454 Sequencing (SRP001807)
88
172
+
Leu
TAG
[SRA]
Identical group No.206667 (1 seq.)
>SRA1027918
SRR035086.218988
454 Sequencing (SRP001807)
219
303
+
Leu
TAG
[SRA]
Identical group No.225331 (1 seq.)
>SRA1027245
SRR035086.89503
454 Sequencing (SRP001807)
21
101
+
Leu
TAG
[SRA]
Identical group No.225332 (1 seq.)
>SRA1027529
SRR035086.142879
454 Sequencing (SRP001807)
110
28
-
Leu
TAG
[SRA]
Identical group No.225333 (1 seq.)
>SRA1027748
SRR035086.185997
454 Sequencing (SRP001807)
177
94
-
Leu
TAG
[SRA]
Identical group No.225338 (1 seq.)
>SRA1027662
SRR035086.168390
454 Sequencing (SRP001807)
313
393
+
Leu
TAG
[SRA]
Identical group No.229721 (8 seq.)
>WENV180387600
OBPF01020109
[OBPF] marine metagenome; Sterile flask
111
192
+
Leu
TAG
[ENA]
¢þ
>WENV180589958
OCOS01052554
[OCOS] marine metagenome; Sterile flask
492
411
-
Leu
TAG
[ENA]
¢þ
>WENV182556627
OJDG01025964
[OJDG] seawater metagenome; Sea water
272
191
-
Leu
TAG
[ENA]
¢þ
>WENV170617464
FUWD012926983
[FUWD] metagenome; unknown
411
332
-
Leu
TAG
[ENA]
¢þ
>WENV170617465
FUWD012926984
[FUWD] metagenome; unknown
525
446
-
Leu
TAG
[ENA]
¢þ
>SRA1026914
SRR035086.27997
454 Sequencing (SRP001807)
110
31
-
Leu
TAG
[SRA]
>SRA1028171
SRR035086.269486
454 Sequencing (SRP001807)
53
132
+
Leu
TAG
[SRA]
>SRA1028292
SRR035086.293345
454 Sequencing (SRP001807)
237
158
-
Leu
TAG
[SRA]
Identical group No.230476 (2 seq.)
>WENV170612861
FUWD012709749
[FUWD] metagenome; unknown
7
86
+
Leu
TAG
[ENA]
¢þ
>SRA1027067
SRR035086.56025
454 Sequencing (SRP001807)
146
67
-
Leu
TAG
[SRA]
Identical group No.398862 (1 seq.)
>SRA1027960
SRR035086.227404
454 Sequencing (SRP001807)
410
334
-
Leu
TAG
[SRA]
Identical group No.547981 (3 seq.)
>WENV170607879
FUWD010865570
[FUWD] metagenome; unknown
525
450
-
Leu
TAG
[ENA]
¢þ
>SRA1027645
SRR035086.165960
454 Sequencing (SRP001807)
510
435
-
Leu
TAG
[SRA]
>SRA1053516
SRR035098.425230
454 Sequencing (SRP001819)
294
369
+
Leu
TAG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK