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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001807)
Anticodon = TCG
HIT:
12 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.261009 (1 seq.)
>SRA1027878
SRR035086.211587
454 Sequencing (SRP001807)
389
315
-
Arg
TCG
[SRA]
Identical group No.279256 (7 seq.)
>w027452
ABCE01000029
Planctomycetota
Gimesia maris DSM 8797 [ABCE]
15325
15401
+
Arg
TCG
[ENA]
¡û
>WENV170015050
AZIC01019750
[AZIC] marine sediment metagenome; sample MGS-MES from oil contaminated site at the harbour of Messina (Sicily, Italy)
2831
2758
-
Arg
TCG
[ENA]
¢þ
>WENV170121007
CENL01037920
[CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
209628
209702
+
Arg
TCG
[ENA]
¢þ
>WENV170622001
FUWD013083381
[FUWD] metagenome; unknown
733
806
+
Arg
TCG
[ENA]
¢þ
>WENV170630204
FUWD013298570
[FUWD] metagenome; unknown
733
806
+
Arg
TCG
[ENA]
¢þ
>SRA1027459
SRR035086.127444
454 Sequencing (SRP001807)
89
162
+
Arg
TCG
[SRA]
>SRA1027889
SRR035086.213040
454 Sequencing (SRP001807)
350
423
+
Arg
TCG
[SRA]
Identical group No.398846 (1 seq.)
>SRA1027562
SRR035086.147665
454 Sequencing (SRP001807)
446
370
-
Arg
TCG
[SRA]
Identical group No.398877 (1 seq.)
>SRA1028331
SRR035086.302091
454 Sequencing (SRP001807)
365
438
+
Arg
TCG
[SRA]
Identical group No.398884 (1 seq.)
>SRA1028566
SRR035086.359579
454 Sequencing (SRP001807)
180
107
-
Arg
TCG
[SRA]
Identical group No.548584 (36 seq.)
>WENV180637821
OCRG01141051
[OCRG] marine metagenome; seawater
156
228
+
Arg
TCG
[ENA]
¢þ
>WENV170617213
FUWD012918122
[FUWD] metagenome; unknown
170
98
-
Arg
TCG
[ENA]
¢þ
>WENV170617214
FUWD012918124
[FUWD] metagenome; unknown
3672
3600
-
Arg
TCG
[ENA]
¢þ
>SRA1025325
SRR035084.552432
454 Sequencing (SRP001805)
198
126
-
Arg
TCG
[SRA]
>SRA1026856
SRR035086.11278
454 Sequencing (SRP001807)
210
138
-
Arg
TCG
[SRA]
>SRA1026870
SRR035086.16971
454 Sequencing (SRP001807)
90
18
-
Arg
TCG
[SRA]
>SRA1026889
SRR035086.21482
454 Sequencing (SRP001807)
372
444
+
Arg
TCG
[SRA]
>SRA1027073
SRR035086.57270
454 Sequencing (SRP001807)
99
171
+
Arg
TCG
[SRA]
>SRA1027148
SRR035086.71703
454 Sequencing (SRP001807)
97
169
+
Arg
TCG
[SRA]
>SRA1027185
SRR035086.76707
454 Sequencing (SRP001807)
364
436
+
Arg
TCG
[SRA]
>SRA1027219
SRR035086.84474
454 Sequencing (SRP001807)
226
298
+
Arg
TCG
[SRA]
>SRA1027344
SRR035086.109781
454 Sequencing (SRP001807)
297
225
-
Arg
TCG
[SRA]
>SRA1027345
SRR035086.109785
454 Sequencing (SRP001807)
318
246
-
Arg
TCG
[SRA]
>SRA1027346
SRR035086.110371
454 Sequencing (SRP001807)
317
245
-
Arg
TCG
[SRA]
>SRA1027536
SRR035086.143696
454 Sequencing (SRP001807)
230
158
-
Arg
TCG
[SRA]
>SRA1027559
SRR035086.146942
454 Sequencing (SRP001807)
96
168
+
Arg
TCG
[SRA]
>SRA1027570
SRR035086.149949
454 Sequencing (SRP001807)
138
210
+
Arg
TCG
[SRA]
>SRA1027608
SRR035086.159397
454 Sequencing (SRP001807)
511
439
-
Arg
TCG
[SRA]
>SRA1027693
SRR035086.175238
454 Sequencing (SRP001807)
242
314
+
Arg
TCG
[SRA]
>SRA1027758
SRR035086.187725
454 Sequencing (SRP001807)
340
412
+
Arg
TCG
[SRA]
>SRA1028102
SRR035086.259184
454 Sequencing (SRP001807)
207
279
+
Arg
TCG
[SRA]
>SRA1028150
SRR035086.267183
454 Sequencing (SRP001807)
130
58
-
Arg
TCG
[SRA]
>SRA1028272
SRR035086.289145
454 Sequencing (SRP001807)
183
255
+
Arg
TCG
[SRA]
>SRA1028283
SRR035086.291199
454 Sequencing (SRP001807)
112
40
-
Arg
TCG
[SRA]
>SRA1028355
SRR035086.307633
454 Sequencing (SRP001807)
90
18
-
Arg
TCG
[SRA]
>SRA1028361
SRR035086.308327
454 Sequencing (SRP001807)
239
167
-
Arg
TCG
[SRA]
>SRA1028390
SRR035086.314651
454 Sequencing (SRP001807)
239
167
-
Arg
TCG
[SRA]
>SRA1028467
SRR035086.333337
454 Sequencing (SRP001807)
274
202
-
Arg
TCG
[SRA]
>SRA1028485
SRR035086.337192
454 Sequencing (SRP001807)
86
158
+
Arg
TCG
[SRA]
>SRA1028489
SRR035086.338822
454 Sequencing (SRP001807)
274
202
-
Arg
TCG
[SRA]
>SRA1050787
SRR035096.20531
454 Sequencing (SRP001817)
420
348
-
Arg
TCG
[SRA]
>SRA1050865
SRR035096.38115
454 Sequencing (SRP001817)
345
273
-
Arg
TCG
[SRA]
>SRA1050952
SRR035096.58420
454 Sequencing (SRP001817)
50
122
+
Arg
TCG
[SRA]
>SRA1051088
SRR035096.83611
454 Sequencing (SRP001817)
214
142
-
Arg
TCG
[SRA]
>SRA1051168
SRR035096.101117
454 Sequencing (SRP001817)
65
137
+
Arg
TCG
[SRA]
>SRA1051199
SRR035096.107402
454 Sequencing (SRP001817)
110
38
-
Arg
TCG
[SRA]
Identical group No.593612 (5 seq.)
>SRA1026853
SRR035086.10614
454 Sequencing (SRP001807)
287
215
-
Arg
TCG
[SRA]
>SRA1027415
SRR035086.121094
454 Sequencing (SRP001807)
132
204
+
Arg
TCG
[SRA]
>SRA1028343
SRR035086.305697
454 Sequencing (SRP001807)
188
116
-
Arg
TCG
[SRA]
>SRA1050924
SRR035096.52775
454 Sequencing (SRP001817)
182
110
-
Arg
TCG
[SRA]
>SRA1051384
SRR035096.164729
454 Sequencing (SRP001817)
270
198
-
Arg
TCG
[SRA]
Identical group No.593619 (1 seq.)
>SRA1027080
SRR035086.58527
454 Sequencing (SRP001807)
440
512
+
Arg
TCG
[SRA]
Identical group No.593649 (1 seq.)
>SRA1028124
SRR035086.263590
454 Sequencing (SRP001807)
156
84
-
Arg
TCG
[SRA]
Identical group No.593667 (1 seq.)
>SRA1028519
SRR035086.346055
454 Sequencing (SRP001807)
207
279
+
Arg
TCG
[SRA]
Identical group No.711560 (7 seq.)
>WENV170626863
FUWD013229908
[FUWD] metagenome; unknown
10379
10451
+
Arg
TCG
[ENA]
¢þ
>SRA1024532
SRR035084.343663
454 Sequencing (SRP001805)
185
113
-
Arg
TCG
[SRA]
>SRA1025038
SRR035084.465723
454 Sequencing (SRP001805)
321
393
+
Arg
TCG
[SRA]
>SRA1027272
SRR035086.93500
454 Sequencing (SRP001807)
316
244
-
Arg
TCG
[SRA]
>SRA1027362
SRR035086.112557
454 Sequencing (SRP001807)
440
512
+
Arg
TCG
[SRA]
>SRA1027655
SRR035086.167701
454 Sequencing (SRP001807)
318
246
-
Arg
TCG
[SRA]
>SRA1028320
SRR035086.299631
454 Sequencing (SRP001807)
317
245
-
Arg
TCG
[SRA]
Identical group No.739361 (1 seq.)
>SRA1027917
SRR035086.218521
454 Sequencing (SRP001807)
82
10
-
Arg
TCG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK