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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = AAG
HIT:
9 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.74730 (4 seq.)
>WENV170612226
FUWD012541889
[FUWD] metagenome; unknown
211
299
+
Leu
AAG
[ENA]
¢þ
>SRA1029758
SRR035087.177031
454 Sequencing (SRP001808)
302
390
+
Leu
AAG
[SRA]
>SRA1033987
SRR035088.433700
454 Sequencing (SRP001809)
211
299
+
Leu
AAG
[SRA]
>SRA1048420
SRR035094.169512
454 Sequencing (SRP001815)
124
36
-
Leu
AAG
[SRA]
Identical group No.74754 (1 seq.)
>SRA1032102
SRR035087.552840
454 Sequencing (SRP001808)
137
52
-
Leu
AAG
[SRA]
Identical group No.90575 (1 seq.)
>SRA1030844
SRR035087.337861
454 Sequencing (SRP001808)
26
113
+
Leu
AAG
[SRA]
Identical group No.112514 (13 seq.)
>WENV170625884
FUWD013208279
[FUWD] metagenome; unknown
2570
2484
-
Leu
AAG
[ENA]
¢þ
>WENV170625886
FUWD013208280
[FUWD] metagenome; unknown
249
163
-
Leu
AAG
[ENA]
¢þ
>WENV170634101
FUWD013409898
[FUWD] metagenome; unknown
2570
2484
-
Leu
AAG
[ENA]
¢þ
>WENV170634103
FUWD013409899
[FUWD] metagenome; unknown
249
163
-
Leu
AAG
[ENA]
¢þ
>SRA1025516
SRR035085.30004
454 Sequencing (SRP001806)
124
210
+
Leu
AAG
[SRA]
>SRA1031203
SRR035087.390745
454 Sequencing (SRP001808)
166
252
+
Leu
AAG
[SRA]
>SRA1034030
SRR035088.458178
454 Sequencing (SRP001809)
116
30
-
Leu
AAG
[SRA]
>SRA1034349
SRR035089.63644
454 Sequencing (SRP001810)
177
91
-
Leu
AAG
[SRA]
>SRA1047774
SRR035094.39415
454 Sequencing (SRP001815)
46
132
+
Leu
AAG
[SRA]
>SRA1048182
SRR035094.123771
454 Sequencing (SRP001815)
306
392
+
Leu
AAG
[SRA]
>SRA1048586
SRR035094.203946
454 Sequencing (SRP001815)
307
393
+
Leu
AAG
[SRA]
>SRA1048852
SRR035094.263604
454 Sequencing (SRP001815)
306
392
+
Leu
AAG
[SRA]
>SRA1049016
SRR035094.314189
454 Sequencing (SRP001815)
124
38
-
Leu
AAG
[SRA]
Identical group No.112519 (5 seq.)
>WENV170623607
FUWD013160274
[FUWD] metagenome; unknown
816
899
+
Leu
AAG
[ENA]
¢þ
>WENV170631884
FUWD013369768
[FUWD] metagenome; unknown
816
899
+
Leu
AAG
[ENA]
¢þ
>SRA1025667
SRR035085.63598
454 Sequencing (SRP001806)
202
119
-
Leu
AAG
[SRA]
>SRA1029535
SRR035087.142967
454 Sequencing (SRP001808)
69
152
+
Leu
AAG
[SRA]
>SRA1044715
SRR035092.327280
454 Sequencing (SRP001813)
226
309
+
Leu
AAG
[SRA]
Identical group No.180202 (3 seq.)
>WENV170611871
FUWD012425783
[FUWD] metagenome; unknown
261
177
-
Leu
AAG
[ENA]
¢þ
>SRA1026238
SRR035085.169369
454 Sequencing (SRP001806)
352
268
-
Leu
AAG
[SRA]
>SRA1031322
SRR035087.412134
454 Sequencing (SRP001808)
261
177
-
Leu
AAG
[SRA]
Identical group No.186098 (3 seq.)
>WENV170600238
FUWD010115619
[FUWD] metagenome; unknown
484
401
-
Leu
AAG
[ENA]
¢þ
>SRA1030863
SRR035087.341473
454 Sequencing (SRP001808)
251
170
-
Leu
AAG
[SRA]
>SRA1033768
SRR035088.349145
454 Sequencing (SRP001809)
69
152
+
Leu
AAG
[SRA]
Identical group No.186115 (1 seq.)
>SRA1031499
SRR035087.439080
454 Sequencing (SRP001808)
89
5
-
Leu
AAG
[SRA]
Identical group No.186116 (1 seq.)
>SRA1031615
SRR035087.460786
454 Sequencing (SRP001808)
550
469
-
Leu
AAG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK