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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = CCG
HIT:
23 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.272563 (11 seq.)
>WENV170624130
FUWD013175373
[FUWD] metagenome; unknown
8225
8301
+
Arg
CCG
[ENA]
¢þ
>WENV170632412
FUWD013381548
[FUWD] metagenome; unknown
8225
8301
+
Arg
CCG
[ENA]
¢þ
>SRA1030156
SRR035087.234854
454 Sequencing (SRP001808)
71
146
+
Arg
CCG
[SRA]
>SRA1033686
SRR035088.325679
454 Sequencing (SRP001809)
473
397
-
Arg
CCG
[SRA]
>SRA1034478
SRR035089.105695
454 Sequencing (SRP001810)
231
307
+
Arg
CCG
[SRA]
>SRA1035021
SRR035089.220716
454 Sequencing (SRP001810)
173
248
+
Arg
CCG
[SRA]
>SRA1047657
SRR035094.13338
454 Sequencing (SRP001815)
214
290
+
Arg
CCG
[SRA]
>SRA1047683
SRR035094.19607
454 Sequencing (SRP001815)
296
220
-
Arg
CCG
[SRA]
>SRA1048093
SRR035094.107205
454 Sequencing (SRP001815)
407
331
-
Arg
CCG
[SRA]
>SRA1048166
SRR035094.121140
454 Sequencing (SRP001815)
297
221
-
Arg
CCG
[SRA]
>SRA1049312
SRR035095.54840
454 Sequencing (SRP001816)
162
86
-
Arg
CCG
[SRA]
Identical group No.272593 (13 seq.)
>WENV170621642
FUWD013066891
[FUWD] metagenome; unknown
1004
1080
+
Arg
CCG
[ENA]
¢þ
>WENV170629832
FUWD013282834
[FUWD] metagenome; unknown
1004
1080
+
Arg
CCG
[ENA]
¢þ
>WENV170723226
LSQX01259727
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
75
1
-
Arg
CCG
[ENA]
¢þ
>SRA1029307
SRR035087.106793
454 Sequencing (SRP001808)
178
254
+
Arg
CCG
[SRA]
>SRA1029948
SRR035087.206764
454 Sequencing (SRP001808)
178
254
+
Arg
CCG
[SRA]
>SRA1030023
SRR035087.217992
454 Sequencing (SRP001808)
103
179
+
Arg
CCG
[SRA]
>SRA1030483
SRR035087.285536
454 Sequencing (SRP001808)
121
45
-
Arg
CCG
[SRA]
>SRA1032162
SRR035087.566305
454 Sequencing (SRP001808)
146
222
+
Arg
CCG
[SRA]
>SRA1034631
SRR035089.140660
454 Sequencing (SRP001810)
289
365
+
Arg
CCG
[SRA]
>SRA1035354
SRR035089.289269
454 Sequencing (SRP001810)
205
129
-
Arg
CCG
[SRA]
>SRA1035816
SRR035089.381053
454 Sequencing (SRP001810)
153
77
-
Arg
CCG
[SRA]
>SRA1036041
SRR035089.432625
454 Sequencing (SRP001810)
152
76
-
Arg
CCG
[SRA]
>SRA1050538
SRR035095.286037
454 Sequencing (SRP001816)
187
263
+
Arg
CCG
[SRA]
Identical group No.272879 (8 seq.)
>WENV170625174
FUWD013193127
[FUWD] metagenome; unknown
362
286
-
Arg
CCG
[ENA]
¢þ
>WENV170633430
FUWD013396202
[FUWD] metagenome; unknown
362
286
-
Arg
CCG
[ENA]
¢þ
>SRA1030496
SRR035087.288032
454 Sequencing (SRP001808)
449
373
-
Arg
CCG
[SRA]
>SRA1032668
SRR035088.75765
454 Sequencing (SRP001809)
23
99
+
Arg
CCG
[SRA]
>SRA1032861
SRR035088.117854
454 Sequencing (SRP001809)
466
390
-
Arg
CCG
[SRA]
>SRA1036331
SRR035089.496812
454 Sequencing (SRP001810)
294
218
-
Arg
CCG
[SRA]
>SRA1036540
SRR035089.544093
454 Sequencing (SRP001810)
63
139
+
Arg
CCG
[SRA]
>SRA1048486
SRR035094.184750
454 Sequencing (SRP001815)
254
178
-
Arg
CCG
[SRA]
Identical group No.272884 (5 seq.)
>WENV170603337
FUWD010302792
[FUWD] metagenome; unknown
114
38
-
Arg
CCG
[ENA]
¢þ
>SRA1031025
SRR035087.361312
454 Sequencing (SRP001808)
100
24
-
Arg
CCG
[SRA]
>SRA1036351
SRR035089.500267
454 Sequencing (SRP001810)
205
281
+
Arg
CCG
[SRA]
>SRA1036486
SRR035089.531916
454 Sequencing (SRP001810)
179
103
-
Arg
CCG
[SRA]
>SRA1043566
SRR035092.139114
454 Sequencing (SRP001813)
112
36
-
Arg
CCG
[SRA]
Identical group No.300333 (1 seq.)
>SRA1029303
SRR035087.105786
454 Sequencing (SRP001808)
368
294
-
Arg
CCG
[SRA]
Identical group No.300443 (2 seq.)
>WENV170779142
LZCG01001636
[LZCG] oil field metagenome; sample BH-FW-1 from oil reservoir
1163
1090
-
Arg
CCG
[ENA]
¢þ
>SRA1030031
SRR035087.218664
454 Sequencing (SRP001808)
310
383
+
Arg
CCG
[SRA]
Identical group No.300559 (6 seq.)
>W131162454
AQYX01000172
Atribacterota
Atribacteria bacterium SCGC AAA252-M02 OP9 bacterium SCGC AAA252-M02 [AQYX]
12493
12417
-
Arg
CCG
[ENA]
¡û
>W131193727
ASOX01000018
Atribacterota
Atribacteria bacterium SCGC AB-164-P05 OP9 bacterium SCGC AB-164-P05 [ASOX]
6218
6294
+
Arg
CCG
[ENA]
¡û
>W131193777
ASPA01000072
Atribacterota
Atribacteria bacterium SCGC AAA255-G05 OP9 bacterium SCGC AAA255-G05 [ASPA]
1168
1092
-
Arg
CCG
[ENA]
¡û
>W131203650
ASZL01000025
Atribacterota
Atribacteria bacterium SCGC AB-164-M20 OP9 bacterium SCGC AB-164-M20 [ASZL]
6127
6051
-
Arg
CCG
[ENA]
¡û
>W141139548
AWNT01000012
Atribacterota
Atribacteria bacterium JGI OTU-1 [AWNT]
12493
12417
-
Arg
CCG
[ENA]
¡û
>SRA1030715
SRR035087.317928
454 Sequencing (SRP001808)
54
130
+
Arg
CCG
[SRA]
Identical group No.300598 (3 seq.)
>WENV170611687
FUWD012374788
[FUWD] metagenome; unknown
48
121
+
Arg
CCG
[ENA]
¢þ
>SRA1019549
SRR035082.475704
454 Sequencing (SRP001803)
357
430
+
Arg
CCG
[SRA]
>SRA1030968
SRR035087.356170
454 Sequencing (SRP001808)
48
121
+
Arg
CCG
[SRA]
Identical group No.300662 (2 seq.)
>WENV170605055
FUWD010444857
[FUWD] metagenome; unknown
167
91
-
Arg
CCG
[ENA]
¢þ
>SRA1031332
SRR035087.413831
454 Sequencing (SRP001808)
334
258
-
Arg
CCG
[SRA]
Identical group No.300674 (1 seq.)
>SRA1031393
SRR035087.423226
454 Sequencing (SRP001808)
437
364
-
Arg
CCG
[SRA]
Identical group No.300760 (1 seq.)
>SRA1032007
SRR035087.530003
454 Sequencing (SRP001808)
278
353
+
Arg
CCG
[SRA]
Identical group No.300806 (1 seq.)
>SRA1032283
SRR035087.595028
454 Sequencing (SRP001808)
423
499
+
Arg
CCG
[SRA]
Identical group No.484060 (1 seq.)
>SRA1028917
SRR035087.36956
454 Sequencing (SRP001808)
136
211
+
Arg
CCG
[SRA]
Identical group No.484183 (2 seq.)
>SRA1029668
SRR035087.160949
454 Sequencing (SRP001808)
30
102
+
Arg
CCG
[SRA]
>SRA1031909
SRR035087.510042
454 Sequencing (SRP001808)
30
102
+
Arg
CCG
[SRA]
Identical group No.484197 (1 seq.)
>SRA1029757
SRR035087.176776
454 Sequencing (SRP001808)
117
42
-
Arg
CCG
[SRA]
Identical group No.484284 (2 seq.)
>WENV170613066
FUWD012778583
[FUWD] metagenome; unknown
441
366
-
Arg
CCG
[ENA]
¢þ
>SRA1030324
SRR035087.263738
454 Sequencing (SRP001808)
43
118
+
Arg
CCG
[SRA]
Identical group No.484468 (1 seq.)
>SRA1031628
SRR035087.462152
454 Sequencing (SRP001808)
336
261
-
Arg
CCG
[SRA]
Identical group No.654548 (7 seq.)
>WENV170612314
FUWD012570647
[FUWD] metagenome; unknown
24
95
+
Arg
CCG
[ENA]
¢þ
>SRA1029420
SRR035087.124824
454 Sequencing (SRP001808)
136
65
-
Arg
CCG
[SRA]
>SRA1029465
SRR035087.131725
454 Sequencing (SRP001808)
136
65
-
Arg
CCG
[SRA]
>SRA1031089
SRR035087.371239
454 Sequencing (SRP001808)
136
65
-
Arg
CCG
[SRA]
>SRA1035587
SRR035089.335355
454 Sequencing (SRP001810)
318
247
-
Arg
CCG
[SRA]
>SRA1035719
SRR035089.360945
454 Sequencing (SRP001810)
33
104
+
Arg
CCG
[SRA]
>SRA1036044
SRR035089.433391
454 Sequencing (SRP001810)
155
84
-
Arg
CCG
[SRA]
Identical group No.672317 (5 seq.)
>WENV170621353
FUWD013056534
[FUWD] metagenome; unknown
171
99
-
Arg
CCG
[ENA]
¢þ
>WENV170629530
FUWD013272944
[FUWD] metagenome; unknown
171
99
-
Arg
CCG
[ENA]
¢þ
>SRA1017853
SRR035082.206712
454 Sequencing (SRP001803)
226
297
+
Arg
CCG
[SRA]
>SRA1029400
SRR035087.121458
454 Sequencing (SRP001808)
360
432
+
Arg
CCG
[SRA]
>SRA1048014
SRR035094.89016
454 Sequencing (SRP001815)
262
190
-
Arg
CCG
[SRA]
Identical group No.672469 (1 seq.)
>SRA1030636
SRR035087.308143
454 Sequencing (SRP001808)
308
236
-
Arg
CCG
[SRA]
Identical group No.672505 (1 seq.)
>SRA1031000
SRR035087.358616
454 Sequencing (SRP001808)
402
330
-
Arg
CCG
[SRA]
Identical group No.672506 (1 seq.)
>SRA1031005
SRR035087.359322
454 Sequencing (SRP001808)
25
100
+
Arg
CCG
[SRA]
Identical group No.672629 (1 seq.)
>SRA1032106
SRR035087.553347
454 Sequencing (SRP001808)
312
239
-
Arg
CCG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK