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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001808)
Anticodon = TAT
HIT:
43 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235659 (1 seq.)
>SRA1031014
SRR035087.360700
454 Sequencing (SRP001808)
216
291
+
Ile
TAT
[SRA]
Identical group No.244422 (9 seq.)
>WENV170626922
FUWD013230100
[FUWD] metagenome; unknown
9971
9894
-
Ile
TAT
[ENA]
¢þ
>WENV170630701
FUWD013321255
[FUWD] metagenome; unknown
8263
8340
+
Ile
TAT
[ENA]
¢þ
>SRA1028797
SRR035087.9030
454 Sequencing (SRP001808)
95
18
-
Ile
TAT
[SRA]
>SRA1040154
SRR035091.49270
454 Sequencing (SRP001812)
449
524
+
Ile
TAT
[SRA]
>SRA1043532
SRR035092.134015
454 Sequencing (SRP001813)
180
103
-
Ile
TAT
[SRA]
>SRA1044327
SRR035092.260768
454 Sequencing (SRP001813)
356
279
-
Ile
TAT
[SRA]
>SRA1048085
SRR035094.106120
454 Sequencing (SRP001815)
95
172
+
Ile
TAT
[SRA]
>SRA1048333
SRR035094.149434
454 Sequencing (SRP001815)
185
108
-
Ile
TAT
[SRA]
>SRA1048490
SRR035094.185453
454 Sequencing (SRP001815)
130
55
-
Ile
TAT
[SRA]
Identical group No.244424 (1 seq.)
>SRA1028845
SRR035087.19612
454 Sequencing (SRP001808)
301
375
+
Ile
TAT
[SRA]
Identical group No.244479 (3 seq.)
>WENV170612643
FUWD012650147
[FUWD] metagenome; unknown
161
86
-
Ile
TAT
[ENA]
¢þ
>SRA1030162
SRR035087.235632
454 Sequencing (SRP001808)
143
68
-
Ile
TAT
[SRA]
>SRA1044129
SRR035092.228561
454 Sequencing (SRP001813)
161
86
-
Ile
TAT
[SRA]
Identical group No.300339 (14 seq.)
>WENV170626855
FUWD013229796
[FUWD] metagenome; unknown
11240
11167
-
Ile
TAT
[ENA]
¢þ
>SRA1023487
SRR035084.109339
454 Sequencing (SRP001805)
113
188
+
Ile
TAT
[SRA]
>SRA1023840
SRR035084.187709
454 Sequencing (SRP001805)
250
177
-
Ile
TAT
[SRA]
>SRA1029347
SRR035087.113127
454 Sequencing (SRP001808)
327
254
-
Ile
TAT
[SRA]
>SRA1051348
SRR035096.149116
454 Sequencing (SRP001817)
314
241
-
Ile
TAT
[SRA]
>SRA1051508
SRR035098.18706
454 Sequencing (SRP001819)
70
143
+
Ile
TAT
[SRA]
>SRA1051562
SRR035098.29851
454 Sequencing (SRP001819)
70
143
+
Ile
TAT
[SRA]
>SRA1051631
SRR035098.43425
454 Sequencing (SRP001819)
70
143
+
Ile
TAT
[SRA]
>SRA1051770
SRR035098.73940
454 Sequencing (SRP001819)
70
143
+
Ile
TAT
[SRA]
>SRA1052173
SRR035098.155806
454 Sequencing (SRP001819)
70
143
+
Ile
TAT
[SRA]
>SRA1052578
SRR035098.231978
454 Sequencing (SRP001819)
70
143
+
Ile
TAT
[SRA]
>SRA1052630
SRR035098.240051
454 Sequencing (SRP001819)
70
143
+
Ile
TAT
[SRA]
>SRA1052652
SRR035098.245230
454 Sequencing (SRP001819)
70
143
+
Ile
TAT
[SRA]
>SRA1053406
SRR035098.399770
454 Sequencing (SRP001819)
70
143
+
Ile
TAT
[SRA]
Identical group No.300404 (4 seq.)
>WENV170626609
FUWD013226691
[FUWD] metagenome; unknown
481
405
-
Ile
TAT
[ENA]
¢þ
>WENV170634205
FUWD013412153
[FUWD] metagenome; unknown
5028
5104
+
Ile
TAT
[ENA]
¢þ
>SRA1019767
SRR035082.523518
454 Sequencing (SRP001803)
48
124
+
Ile
TAT
[SRA]
>SRA1029784
SRR035087.180598
454 Sequencing (SRP001808)
294
218
-
Ile
TAT
[SRA]
Identical group No.300421 (1 seq.)
>SRA1029880
SRR035087.195680
454 Sequencing (SRP001808)
85
9
-
Ile
TAT
[SRA]
Identical group No.300423 (1 seq.)
>SRA1029904
SRR035087.199100
454 Sequencing (SRP001808)
521
445
-
Ile
TAT
[SRA]
Identical group No.300439 (1 seq.)
>SRA1030007
SRR035087.215369
454 Sequencing (SRP001808)
271
197
-
Ile
TAT
[SRA]
Identical group No.300557 (6 seq.)
>WENV170622509
FUWD013107458
[FUWD] metagenome; unknown
509
433
-
Ile
TAT
[ENA]
¢þ
>WENV170630734
FUWD013321778
[FUWD] metagenome; unknown
509
433
-
Ile
TAT
[ENA]
¢þ
>SRA1023013
SRR035083.504477
454 Sequencing (SRP001804)
162
86
-
Ile
TAT
[SRA]
>SRA1030679
SRR035087.312485
454 Sequencing (SRP001808)
220
296
+
Ile
TAT
[SRA]
>SRA1043085
SRR035092.42338
454 Sequencing (SRP001813)
38
114
+
Ile
TAT
[SRA]
>SRA1043395
SRR035092.107418
454 Sequencing (SRP001813)
8
84
+
Ile
TAT
[SRA]
Identical group No.300634 (1 seq.)
>SRA1031188
SRR035087.388539
454 Sequencing (SRP001808)
321
247
-
Ile
TAT
[SRA]
Identical group No.300660 (4 seq.)
>WENV170626576
FUWD013225820
[FUWD] metagenome; unknown
303
378
+
Ile
TAT
[ENA]
¢þ
>SRA1017841
SRR035082.205560
454 Sequencing (SRP001803)
37
112
+
Ile
TAT
[SRA]
>SRA1031329
SRR035087.413588
454 Sequencing (SRP001808)
58
133
+
Ile
TAT
[SRA]
>SRA1044403
SRR035092.274740
454 Sequencing (SRP001813)
216
141
-
Ile
TAT
[SRA]
Identical group No.300694 (7 seq.)
>WENV170621637
FUWD013066765
[FUWD] metagenome; unknown
1659
1735
+
Ile
TAT
[ENA]
¢þ
>WENV170629826
FUWD013282718
[FUWD] metagenome; unknown
1659
1735
+
Ile
TAT
[ENA]
¢þ
>SRA1019155
SRR035082.410558
454 Sequencing (SRP001803)
67
143
+
Ile
TAT
[SRA]
>SRA1031529
SRR035087.444937
454 Sequencing (SRP001808)
287
211
-
Ile
TAT
[SRA]
>SRA1032513
SRR035088.34449
454 Sequencing (SRP001809)
251
175
-
Ile
TAT
[SRA]
>SRA1041942
SRR035091.317149
454 Sequencing (SRP001812)
252
176
-
Ile
TAT
[SRA]
>SRA1050136
SRR035095.198102
454 Sequencing (SRP001816)
287
363
+
Ile
TAT
[SRA]
Identical group No.300699 (1 seq.)
>SRA1031555
SRR035087.449384
454 Sequencing (SRP001808)
213
286
+
Ile
TAT
[SRA]
Identical group No.300723 (1 seq.)
>SRA1031700
SRR035087.473774
454 Sequencing (SRP001808)
239
312
+
Ile
TAT
[SRA]
Identical group No.300756 (1 seq.)
>SRA1031961
SRR035087.521268
454 Sequencing (SRP001808)
296
220
-
Ile
TAT
[SRA]
Identical group No.300794 (7 seq.)
>WENV170617915
FUWD012943521
[FUWD] metagenome; unknown
319
244
-
Ile
TAT
[ENA]
¢þ
>WENV170626701
FUWD013228986
[FUWD] metagenome; unknown
103
178
+
Ile
TAT
[ENA]
¢þ
>SRA1019219
SRR035082.420261
454 Sequencing (SRP001803)
209
134
-
Ile
TAT
[SRA]
>SRA1032218
SRR035087.579528
454 Sequencing (SRP001808)
118
43
-
Ile
TAT
[SRA]
>SRA1044489
SRR035092.287975
454 Sequencing (SRP001813)
465
540
+
Ile
TAT
[SRA]
>SRA1045948
SRR035093.203886
454 Sequencing (SRP001814)
175
100
-
Ile
TAT
[SRA]
>SRA1046851
SRR035093.398638
454 Sequencing (SRP001814)
231
306
+
Ile
TAT
[SRA]
Identical group No.453373 (10 seq.)
>WENV170614571
FUWD012837187
[FUWD] metagenome; unknown
8822
8746
-
Ile
TAT
[ENA]
¢þ
>WENV170614572
FUWD012837187
[FUWD] metagenome; unknown
8640
8564
-
Ile
TAT
[ENA]
¢þ
>SRA1019075
SRR035082.396885
454 Sequencing (SRP001803)
219
295
+
Ile
TAT
[SRA]
>SRA1026288
SRR035085.180370
454 Sequencing (SRP001806)
214
290
+
Ile
TAT
[SRA]
>SRA1030565
SRR035087.296354
454 Sequencing (SRP001808)
151
75
-
Ile
TAT
[SRA]
>SRA1043709
SRR035092.163336
454 Sequencing (SRP001813)
130
54
-
Ile
TAT
[SRA]
>SRA1046010
SRR035093.216125
454 Sequencing (SRP001814)
481
406
-
Ile
TAT
[SRA]
>SRA1046374
SRR035093.291897
454 Sequencing (SRP001814)
335
411
+
Ile
TAT
[SRA]
>SRA1047609
SRR035093.601099
454 Sequencing (SRP001814)
164
240
+
Ile
TAT
[SRA]
>SRA1051418
SRR035096.173446
454 Sequencing (SRP001817)
95
19
-
Ile
TAT
[SRA]
Identical group No.453874 (9 seq.)
>WENV170623314
FUWD013145576
[FUWD] metagenome; unknown
667
742
+
Ile
TAT
[ENA]
¢þ
>WENV170631577
FUWD013357538
[FUWD] metagenome; unknown
667
742
+
Ile
TAT
[ENA]
¢þ
>SRA1031994
SRR035087.527968
454 Sequencing (SRP001808)
95
170
+
Ile
TAT
[SRA]
>SRA1036595
SRR035089.558034
454 Sequencing (SRP001810)
30
105
+
Ile
TAT
[SRA]
>SRA1041369
SRR035091.233580
454 Sequencing (SRP001812)
393
318
-
Ile
TAT
[SRA]
>SRA1041805
SRR035091.297467
454 Sequencing (SRP001812)
296
371
+
Ile
TAT
[SRA]
>SRA1041924
SRR035091.315924
454 Sequencing (SRP001812)
95
20
-
Ile
TAT
[SRA]
>SRA1041993
SRR035091.324146
454 Sequencing (SRP001812)
294
219
-
Ile
TAT
[SRA]
>SRA1042343
SRR035091.374918
454 Sequencing (SRP001812)
393
318
-
Ile
TAT
[SRA]
Identical group No.484039 (4 seq.)
>WENV170623109
FUWD013136728
[FUWD] metagenome; unknown
832
907
+
Ile
TAT
[ENA]
¢þ
>WENV170631346
FUWD013349561
[FUWD] metagenome; unknown
555
480
-
Ile
TAT
[ENA]
¢þ
>SRA1017950
SRR035082.219244
454 Sequencing (SRP001803)
113
38
-
Ile
TAT
[SRA]
>SRA1028792
SRR035087.8184
454 Sequencing (SRP001808)
117
42
-
Ile
TAT
[SRA]
Identical group No.484079 (3 seq.)
>WENV170611618
FUWD012358334
[FUWD] metagenome; unknown
145
220
+
Ile
TAT
[ENA]
¢þ
>SRA1018485
SRR035082.298916
454 Sequencing (SRP001803)
349
424
+
Ile
TAT
[SRA]
>SRA1029028
SRR035087.60819
454 Sequencing (SRP001808)
145
220
+
Ile
TAT
[SRA]
Identical group No.484124 (1 seq.)
>SRA1029306
SRR035087.105835
454 Sequencing (SRP001808)
194
119
-
Ile
TAT
[SRA]
Identical group No.484126 (6 seq.)
>WENV170607761
FUWD010854660
[FUWD] metagenome; unknown
375
450
+
Ile
TAT
[ENA]
¢þ
>WENV170611740
FUWD012386527
[FUWD] metagenome; unknown
296
221
-
Ile
TAT
[ENA]
¢þ
>SRA1020570
SRR035083.136071
454 Sequencing (SRP001804)
108
183
+
Ile
TAT
[SRA]
>SRA1021341
SRR035083.245656
454 Sequencing (SRP001804)
296
221
-
Ile
TAT
[SRA]
>SRA1029317
SRR035087.108151
454 Sequencing (SRP001808)
340
265
-
Ile
TAT
[SRA]
>WENV070528
AACY023812501
Marine microbial communities from Global Ocean Sampling (GOS)
107
182
+
Ile
TAT
[ENA]
Identical group No.484202 (7 seq.)
>WENV170626782
FUWD013229450
[FUWD] metagenome; unknown
5561
5634
+
Ile
TAT
[ENA]
¢þ
>SRA1029804
SRR035087.184171
454 Sequencing (SRP001808)
258
331
+
Ile
TAT
[SRA]
>SRA1040569
SRR035091.116420
454 Sequencing (SRP001812)
206
133
-
Ile
TAT
[SRA]
>SRA1040928
SRR035091.170399
454 Sequencing (SRP001812)
206
133
-
Ile
TAT
[SRA]
>SRA1041432
SRR035091.240994
454 Sequencing (SRP001812)
122
195
+
Ile
TAT
[SRA]
>SRA1041437
SRR035091.242145
454 Sequencing (SRP001812)
134
61
-
Ile
TAT
[SRA]
>SRA1042443
SRR035091.387258
454 Sequencing (SRP001812)
124
197
+
Ile
TAT
[SRA]
Identical group No.484310 (1 seq.)
>SRA1030516
SRR035087.290081
454 Sequencing (SRP001808)
239
164
-
Ile
TAT
[SRA]
Identical group No.484348 (2 seq.)
>WENV170607933
FUWD010872800
[FUWD] metagenome; unknown
497
570
+
Ile
TAT
[ENA]
¢þ
>SRA1030775
SRR035087.330555
454 Sequencing (SRP001808)
112
185
+
Ile
TAT
[SRA]
Identical group No.484405 (1 seq.)
>SRA1031181
SRR035087.387072
454 Sequencing (SRP001808)
310
237
-
Ile
TAT
[SRA]
Identical group No.484481 (1 seq.)
>SRA1031741
SRR035087.479498
454 Sequencing (SRP001808)
135
210
+
Ile
TAT
[SRA]
Identical group No.672243 (1 seq.)
>SRA1028842
SRR035087.19045
454 Sequencing (SRP001808)
294
220
-
Ile
TAT
[SRA]
Identical group No.672255 (1 seq.)
>SRA1028927
SRR035087.38082
454 Sequencing (SRP001808)
176
247
+
Ile
TAT
[SRA]
Identical group No.672264 (1 seq.)
>SRA1028982
SRR035087.51986
454 Sequencing (SRP001808)
71
-1
-
Ile
TAT
[SRA]
Identical group No.672290 (1 seq.)
>SRA1029171
SRR035087.86710
454 Sequencing (SRP001808)
189
261
+
Ile
TAT
[SRA]
Identical group No.672301 (1 seq.)
>SRA1029265
SRR035087.99664
454 Sequencing (SRP001808)
76
2
-
Ile
TAT
[SRA]
Identical group No.672425 (2 seq.)
>SRA1030250
SRR035087.249402
454 Sequencing (SRP001808)
81
153
+
Ile
TAT
[SRA]
>SRA1042700
SRR035091.431903
454 Sequencing (SRP001812)
122
50
-
Ile
TAT
[SRA]
Identical group No.672436 (1 seq.)
>SRA1030349
SRR035087.265837
454 Sequencing (SRP001808)
87
13
-
Ile
TAT
[SRA]
Identical group No.672456 (1 seq.)
>SRA1030504
SRR035087.288450
454 Sequencing (SRP001808)
116
44
-
Ile
TAT
[SRA]
Identical group No.672483 (4 seq.)
>WENV170623450
FUWD013151973
[FUWD] metagenome; unknown
730
801
+
Ile
TAT
[ENA]
¢þ
>WENV170631026
FUWD013335346
[FUWD] metagenome; unknown
4345
4416
+
Ile
TAT
[ENA]
¢þ
>SRA1030807
SRR035087.333340
454 Sequencing (SRP001808)
245
316
+
Ile
TAT
[SRA]
>SRA1047530
SRR035093.567729
454 Sequencing (SRP001814)
151
80
-
Ile
TAT
[SRA]
Identical group No.672501 (1 seq.)
>SRA1030978
SRR035087.356917
454 Sequencing (SRP001808)
233
307
+
Ile
TAT
[SRA]
Identical group No.672515 (4 seq.)
>WENV170611653
FUWD012366621
[FUWD] metagenome; unknown
1
73
+
Ile
TAT
[ENA]
¢þ
>SRA1017722
SRR035082.185536
454 Sequencing (SRP001803)
1
73
+
Ile
TAT
[SRA]
>SRA1018985
SRR035082.382752
454 Sequencing (SRP001803)
170
242
+
Ile
TAT
[SRA]
>SRA1031054
SRR035087.365058
454 Sequencing (SRP001808)
271
343
+
Ile
TAT
[SRA]
Identical group No.672534 (1 seq.)
>SRA1031197
SRR035087.390170
454 Sequencing (SRP001808)
264
335
+
Ile
TAT
[SRA]
Identical group No.672615 (3 seq.)
>WENV170620397
FUWD013031012
[FUWD] metagenome; unknown
441
369
-
Ile
TAT
[ENA]
¢þ
>WENV170628535
FUWD013248552
[FUWD] metagenome; unknown
441
369
-
Ile
TAT
[ENA]
¢þ
>SRA1031933
SRR035087.515407
454 Sequencing (SRP001808)
361
289
-
Ile
TAT
[SRA]
Identical group No.787998 (2 seq.)
>SRA1028835
SRR035087.16996
454 Sequencing (SRP001808)
124
194
+
Ile
TAT
[SRA]
>SRA1028979
SRR035087.51261
454 Sequencing (SRP001808)
124
194
+
Ile
TAT
[SRA]
Identical group No.788045 (2 seq.)
>SRA1029388
SRR035087.120467
454 Sequencing (SRP001808)
107
34
-
Ile
TAT
[SRA]
>SRA1030051
SRR035087.220812
454 Sequencing (SRP001808)
107
34
-
Ile
TAT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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