This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001810)
Anticodon = AGT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.453612 (6 seq.)
>WENV170600340
FUWD010120825
[FUWD] metagenome; unknown
302
227
-
Thr
AGT
[ENA]
¢þ
>SRA1018509
SRR035082.302389
454 Sequencing (SRP001803)
203
128
-
Thr
AGT
[SRA]
>SRA1034966
SRR035089.208703
454 Sequencing (SRP001810)
31
106
+
Thr
AGT
[SRA]
>SRA1045137
SRR035093.4054
454 Sequencing (SRP001814)
252
177
-
Thr
AGT
[SRA]
>SRA1046954
SRR035093.424735
454 Sequencing (SRP001814)
254
179
-
Thr
AGT
[SRA]
>SRA1051323
SRR035096.138531
454 Sequencing (SRP001817)
129
204
+
Thr
AGT
[SRA]
Identical group No.453803 (3 seq.)
>WENV170611527
FUWD012340979
[FUWD] metagenome; unknown
113
41
-
Thr
AGT
[ENA]
¢þ
>SRA1017469
SRR035082.144334
454 Sequencing (SRP001803)
113
41
-
Thr
AGT
[SRA]
>SRA1036128
SRR035089.450588
454 Sequencing (SRP001810)
262
334
+
Thr
AGT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK