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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001810)
Anticodon = CGA
HIT:
36 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.5749 (1 seq.)
>SRA1036472
SRR035089.530312
454 Sequencing (SRP001810)
160
254
+
Ser
CGA
[SRA]
Identical group No.5750 (1 seq.)
>SRA1036475
SRR035089.530413
454 Sequencing (SRP001810)
187
93
-
Ser
CGA
[SRA]
Identical group No.5751 (1 seq.)
>SRA1036689
SRR035089.585121
454 Sequencing (SRP001810)
586
494
-
Ser
CGA
[SRA]
Identical group No.5752 (1 seq.)
>SRA1036761
SRR035089.608417
454 Sequencing (SRP001810)
219
125
-
Ser
CGA
[SRA]
Identical group No.8251 (18 seq.)
>WENV170599776
FUWD010091905
[FUWD] metagenome; unknown
98
5
-
Ser
CGA
[ENA]
¢þ
>WENV170616560
FUWD012891147
[FUWD] metagenome; unknown
3496
3403
-
Ser
CGA
[ENA]
¢þ
>SRA1026001
SRR035085.124619
454 Sequencing (SRP001806)
279
372
+
Ser
CGA
[SRA]
>SRA1026239
SRR035085.169498
454 Sequencing (SRP001806)
132
39
-
Ser
CGA
[SRA]
>SRA1026398
SRR035085.201684
454 Sequencing (SRP001806)
405
312
-
Ser
CGA
[SRA]
>SRA1026449
SRR035085.208930
454 Sequencing (SRP001806)
269
362
+
Ser
CGA
[SRA]
>SRA1026755
SRR035085.280550
454 Sequencing (SRP001806)
44
137
+
Ser
CGA
[SRA]
>SRA1029042
SRR035087.64489
454 Sequencing (SRP001808)
411
318
-
Ser
CGA
[SRA]
>SRA1029458
SRR035087.130270
454 Sequencing (SRP001808)
177
84
-
Ser
CGA
[SRA]
>SRA1030801
SRR035087.333235
454 Sequencing (SRP001808)
100
193
+
Ser
CGA
[SRA]
>SRA1030953
SRR035087.354145
454 Sequencing (SRP001808)
412
319
-
Ser
CGA
[SRA]
>SRA1032293
SRR035087.596928
454 Sequencing (SRP001808)
397
304
-
Ser
CGA
[SRA]
>SRA1035834
SRR035089.384851
454 Sequencing (SRP001810)
232
139
-
Ser
CGA
[SRA]
>SRA1036006
SRR035089.425438
454 Sequencing (SRP001810)
164
71
-
Ser
CGA
[SRA]
>SRA1049066
SRR035095.13633
454 Sequencing (SRP001816)
168
75
-
Ser
CGA
[SRA]
>SRA1049187
SRR035095.34347
454 Sequencing (SRP001816)
340
433
+
Ser
CGA
[SRA]
>SRA1049747
SRR035095.132861
454 Sequencing (SRP001816)
340
433
+
Ser
CGA
[SRA]
>SRA1050288
SRR035095.232058
454 Sequencing (SRP001816)
188
95
-
Ser
CGA
[SRA]
Identical group No.12310 (1 seq.)
>SRA1034385
SRR035089.76067
454 Sequencing (SRP001810)
150
242
+
Ser
CGA
[SRA]
Identical group No.12319 (1 seq.)
>SRA1036461
SRR035089.528043
454 Sequencing (SRP001810)
408
317
-
Ser
CGA
[SRA]
Identical group No.19925 (1 seq.)
>SRA1035025
SRR035089.221131
454 Sequencing (SRP001810)
175
266
+
Ser
CGA
[SRA]
Identical group No.19928 (6 seq.)
>WENV170625515
FUWD013199648
[FUWD] metagenome; unknown
1341
1250
-
Ser
CGA
[ENA]
¢þ
>WENV170633744
FUWD013402004
[FUWD] metagenome; unknown
1341
1250
-
Ser
CGA
[ENA]
¢þ
>SRA1030891
SRR035087.343624
454 Sequencing (SRP001808)
45
136
+
Ser
CGA
[SRA]
>SRA1035450
SRR035089.307273
454 Sequencing (SRP001810)
212
303
+
Ser
CGA
[SRA]
>SRA1036073
SRR035089.438285
454 Sequencing (SRP001810)
385
294
-
Ser
CGA
[SRA]
>SRA1036544
SRR035089.545408
454 Sequencing (SRP001810)
299
390
+
Ser
CGA
[SRA]
Identical group No.19930 (1 seq.)
>SRA1036145
SRR035089.454733
454 Sequencing (SRP001810)
235
144
-
Ser
CGA
[SRA]
Identical group No.19932 (9 seq.)
>W1711065938
LSCC01000034
Unclassified
Marinimicrobia bacterium TCS52 [LSCC]
3557
3648
+
Ser
CGA
[ENA]
¡û
>W1711066038
LSCH01000059
Unclassified
Marinimicrobia bacterium TCS57 [LSCH]
1837
1746
-
Ser
CGA
[ENA]
¡û
>W1711066051
LSCI01000059
Unclassified
Marinimicrobia bacterium TCS58 [LSCI]
1837
1746
-
Ser
CGA
[ENA]
¡û
>WENV170620894
FUWD013042313
[FUWD] metagenome; unknown
1430
1521
+
Ser
CGA
[ENA]
¢þ
>WENV170629047
FUWD013259353
[FUWD] metagenome; unknown
1375
1284
-
Ser
CGA
[ENA]
¢þ
>SRA1036238
SRR035089.477364
454 Sequencing (SRP001810)
308
217
-
Ser
CGA
[SRA]
>W1610906552
LSCC01000034
Unclassified
Marinimicrobia bacterium TCS52 [LSCC]
3557
3648
+
Ser
CGA
[ENA]
¡û
>W1610906652
LSCH01000059
Unclassified
Marinimicrobia bacterium TCS57 [LSCH]
1837
1746
-
Ser
CGA
[ENA]
¡û
>W1610906665
LSCI01000059
Unclassified
Marinimicrobia bacterium TCS58 [LSCI]
1837
1746
-
Ser
CGA
[ENA]
¡û
Identical group No.19935 (1 seq.)
>SRA1036672
SRR035089.579298
454 Sequencing (SRP001810)
200
290
+
Ser
CGA
[SRA]
Identical group No.30421 (5 seq.)
>WENV170626610
FUWD013226691
[FUWD] metagenome; unknown
188
98
-
Ser
CGA
[ENA]
¢þ
>WENV170634206
FUWD013412153
[FUWD] metagenome; unknown
5321
5411
+
Ser
CGA
[ENA]
¢þ
>SRA1034738
SRR035089.163527
454 Sequencing (SRP001810)
288
198
-
Ser
CGA
[SRA]
>SRA1044969
SRR035092.381857
454 Sequencing (SRP001813)
88
178
+
Ser
CGA
[SRA]
>SRA1049889
SRR035095.154743
454 Sequencing (SRP001816)
82
172
+
Ser
CGA
[SRA]
Identical group No.30427 (1 seq.)
>SRA1035316
SRR035089.282986
454 Sequencing (SRP001810)
182
272
+
Ser
CGA
[SRA]
Identical group No.30430 (9 seq.)
>WENV170620368
FUWD013030516
[FUWD] metagenome; unknown
3090
3000
-
Ser
CGA
[ENA]
¢þ
>WENV170628505
FUWD013248084
[FUWD] metagenome; unknown
3090
3000
-
Ser
CGA
[ENA]
¢þ
>SRA1035770
SRR035089.372855
454 Sequencing (SRP001810)
358
268
-
Ser
CGA
[SRA]
>SRA1037139
SRR035090.80349
454 Sequencing (SRP001811)
225
315
+
Ser
CGA
[SRA]
>SRA1037834
SRR035090.202982
454 Sequencing (SRP001811)
126
216
+
Ser
CGA
[SRA]
>SRA1038847
SRR035090.379074
454 Sequencing (SRP001811)
23
113
+
Ser
CGA
[SRA]
>SRA1039540
SRR035090.511381
454 Sequencing (SRP001811)
49
139
+
Ser
CGA
[SRA]
>SRA1039634
SRR035090.533728
454 Sequencing (SRP001811)
244
154
-
Ser
CGA
[SRA]
>SRA1054742
SRR035099.204644
454 Sequencing (SRP001820)
140
230
+
Ser
CGA
[SRA]
Identical group No.30432 (1 seq.)
>SRA1036171
SRR035089.461813
454 Sequencing (SRP001810)
184
94
-
Ser
CGA
[SRA]
Identical group No.30434 (1 seq.)
>SRA1036582
SRR035089.554577
454 Sequencing (SRP001810)
279
189
-
Ser
CGA
[SRA]
Identical group No.45861 (75 seq.)
>W1710861307
LMDN01000001
Actinomycetota
Leifsonia sp. Root4 [LMDN]
971176
971087
-
Ser
CGA
[ENA]
¡û
>W1710862317
LMEH01000001
Actinomycetota
Leifsonia sp. Root1293 [LMEH]
2096061
2095972
-
Ser
CGA
[ENA]
¡û
>W1710865443
LMGR01000001
Actinomycetota
Leifsonia sp. Root60 [LMGR]
2095920
2095831
-
Ser
CGA
[ENA]
¡û
>W1710873322
LMMR01000006
Actinomycetota
Leifsonia sp. Leaf264 [LMMR]
212956
212867
-
Ser
CGA
[ENA]
¡û
>W1710875474
LMOK01000002
Actinomycetota
Leifsonia sp. Leaf325 [LMOK]
385973
386062
+
Ser
CGA
[ENA]
¡û
>W1711386877
MEFY01000002
Actinomycetota
Leifsonia sp. SCN 70-46 [MEFY]
1006538
1006627
+
Ser
CGA
[ENA]
¡û
>W1711505532
MKVP01000001
Actinomycetota
Micrococcales bacterium 70-64 [MKVP]
1599502
1599591
+
Ser
CGA
[ENA]
¡û
>WENV180394390
OBPS01003310
[OBPS] marine metagenome; ENVO:00002010 seawater
1089
1178
+
Ser
CGA
[ENA]
¢þ
>WENV181319388
OFKD01017839
[OFKD] marine metagenome; seawater
481
393
-
Ser
CGA
[ENA]
¢þ
>WENV182540397
OJAJ01000177
[OJAJ] seawater metagenome; Sea water
1070
981
-
Ser
CGA
[ENA]
¢þ
>WENV182540883
OJAQ01000269
[OJAQ] seawater metagenome; Sea water
7787
7876
+
Ser
CGA
[ENA]
¢þ
>WENV182542832
OJAZ01003489
[OJAZ] seawater metagenome; Sea water
1519
1430
-
Ser
CGA
[ENA]
¢þ
>WENV182544266
OJBF01000792
[OJBF] seawater metagenome; Sea water
1775
1686
-
Ser
CGA
[ENA]
¢þ
>WENV182544458
OJBG01002690
[OJBG] seawater metagenome; Sea water
955
866
-
Ser
CGA
[ENA]
¢þ
>WENV182548457
OJBW01000254
[OJBW] seawater metagenome; Sea water
1091
1180
+
Ser
CGA
[ENA]
¢þ
>WENV182550134
OJBZ01004907
[OJBZ] seawater metagenome; Sea water
1817
1905
+
Ser
CGA
[ENA]
¢þ
>WENV182552690
OJCN01007767
[OJCN] seawater metagenome; Sea water
182
271
+
Ser
CGA
[ENA]
¢þ
>WENV182553246
OJCR01000864
[OJCR] seawater metagenome; Sea water
10187
10276
+
Ser
CGA
[ENA]
¢þ
>WENV182554105
OJCT01001266
[OJCT] seawater metagenome; Sea water
1830
1741
-
Ser
CGA
[ENA]
¢þ
>WENV182556578
OJDG01019375
[OJDG] seawater metagenome; Sea water
735
646
-
Ser
CGA
[ENA]
¢þ
>WENV182557260
OJDI01003687
[OJDI] seawater metagenome; Sea water
1503
1414
-
Ser
CGA
[ENA]
¢þ
>WENV182561584
OJDX01000014
[OJDX] seawater metagenome; Sea water
42861
42950
+
Ser
CGA
[ENA]
¢þ
>WENV182561923
OJDY01000013
[OJDY] seawater metagenome; Sea water
5463
5374
-
Ser
CGA
[ENA]
¢þ
>WENV182562665
OJEA01000026
[OJEA] seawater metagenome; Sea water
33448
33537
+
Ser
CGA
[ENA]
¢þ
>WENV182563046
OJEB01000013
[OJEB] seawater metagenome; Sea water
1533
1444
-
Ser
CGA
[ENA]
¢þ
>WENV182564058
OJEE01000024
[OJEE] seawater metagenome; Sea water
3010
2921
-
Ser
CGA
[ENA]
¢þ
>WENV182569021
OJEY01000029
[OJEY] seawater metagenome; Sea water
1781
1692
-
Ser
CGA
[ENA]
¢þ
>WENV182569685
OJFB01000017
[OJFB] seawater metagenome; Sea water
43145
43234
+
Ser
CGA
[ENA]
¢þ
>WENV182571215
OJFG01002005
[OJFG] seawater metagenome; Sea water
763
852
+
Ser
CGA
[ENA]
¢þ
>WENV182572521
OJFL01017053
[OJFL] seawater metagenome; Sea water
440
529
+
Ser
CGA
[ENA]
¢þ
>WENV182573630
OJFP01007426
[OJFP] seawater metagenome; Sea water
623
712
+
Ser
CGA
[ENA]
¢þ
>WENV182574617
OJFS01000137
[OJFS] seawater metagenome; Sea water
33409
33498
+
Ser
CGA
[ENA]
¢þ
>WENV182575847
OJFW01008704
[OJFW] seawater metagenome; Sea water
365
276
-
Ser
CGA
[ENA]
¢þ
>WENV182576712
OJFY01002295
[OJFY] seawater metagenome; Sea water
154
243
+
Ser
CGA
[ENA]
¢þ
>WENV182577916
OJGM01000012
[OJGM] seawater metagenome; Sea water
32098
32187
+
Ser
CGA
[ENA]
¢þ
>WENV182579565
OJGS01024769
[OJGS] seawater metagenome; Sea water
135
223
+
Ser
CGA
[ENA]
¢þ
>WENV182580897
OJGW01024509
[OJGW] seawater metagenome; Sea water
950
861
-
Ser
CGA
[ENA]
¢þ
>WENV182582094
OJHA01000010
[OJHA] seawater metagenome; Sea water
2877
2788
-
Ser
CGA
[ENA]
¢þ
>WENV182582397
OJHB01000028
[OJHB] seawater metagenome; Sea water
1637
1548
-
Ser
CGA
[ENA]
¢þ
>WENV182583082
OJHD01000135
[OJHD] seawater metagenome; Sea water
1540
1451
-
Ser
CGA
[ENA]
¢þ
>WENV182584653
OJHG01003843
[OJHG] seawater metagenome; Sea water
1493
1404
-
Ser
CGA
[ENA]
¢þ
>WENV182586845
OJHK01007206
[OJHK] seawater metagenome; Sea water
1230
1319
+
Ser
CGA
[ENA]
¢þ
>WENV182587546
OJHN01000026
[OJHN] seawater metagenome; Sea water
24211
24300
+
Ser
CGA
[ENA]
¢þ
>WENV182592339
OJIR01000037
[OJIR] seawater metagenome; Sea water
1857
1768
-
Ser
CGA
[ENA]
¢þ
>WENV183054524
OLGU01000028
[OLGU] seawater metagenome; Sea water
43054
43143
+
Ser
CGA
[ENA]
¢þ
>WENV183055038
OLGW01001716
[OLGW] seawater metagenome; Sea water
134
223
+
Ser
CGA
[ENA]
¢þ
>WENV183059031
OLHS01001566
[OLHS] seawater metagenome; Sea water
844
755
-
Ser
CGA
[ENA]
¢þ
>WENV183059212
OLHU01000014
[OLHU] seawater metagenome; Sea water
43150
43239
+
Ser
CGA
[ENA]
¢þ
>WENV183060168
OLHX01000007
[OLHX] seawater metagenome; Sea water
43063
43152
+
Ser
CGA
[ENA]
¢þ
>WENV183060954
OLHY01017757
[OLHY] seawater metagenome; Sea water
655
744
+
Ser
CGA
[ENA]
¢þ
>WENV170568826
FLMP01084381
[FLMP] seawater metagenome; seawater
389
478
+
Ser
CGA
[ENA]
¢þ
>WENV170570739
FLOH01000020
[FLOH] marine metagenome; water
699863
699952
+
Ser
CGA
[ENA]
¢þ
>WENV170570778
FLOH01000022
[FLOH] marine metagenome; water
604794
604705
-
Ser
CGA
[ENA]
¢þ
>WENV170623190
FUWD013140458
[FUWD] metagenome; unknown
18
107
+
Ser
CGA
[ENA]
¢þ
>WENV170627286
FUWD013232482
[FUWD] metagenome; unknown
18777
18688
-
Ser
CGA
[ENA]
¢þ
>WENV170627315
FUWD013232601
[FUWD] metagenome; unknown
2373
2284
-
Ser
CGA
[ENA]
¢þ
>WENV170631447
FUWD013352703
[FUWD] metagenome; unknown
18
107
+
Ser
CGA
[ENA]
¢þ
>WENV170952894
MEHZ011619623
[MEHZ] marine metagenome; marine surface water
33401
33490
+
Ser
CGA
[ENA]
¢þ
>W141750784
JNSD01000013
Actinomycetota
actinobacterium acMicro-4 [JNSD]
134885
134974
+
Ser
CGA
[ENA]
¡û
>SRA1034655
SRR035089.146442
454 Sequencing (SRP001810)
421
332
-
Ser
CGA
[SRA]
>SRA1045617
SRR035093.134474
454 Sequencing (SRP001814)
255
344
+
Ser
CGA
[SRA]
>SRA1046755
SRR035093.377104
454 Sequencing (SRP001814)
390
479
+
Ser
CGA
[SRA]
>SRA1052885
SRR035098.292433
454 Sequencing (SRP001819)
270
359
+
Ser
CGA
[SRA]
>SRA1052910
SRR035098.298441
454 Sequencing (SRP001819)
250
339
+
Ser
CGA
[SRA]
>SRA1053249
SRR035098.368572
454 Sequencing (SRP001819)
250
339
+
Ser
CGA
[SRA]
>W1511432357
JUGL01000013
Actinomycetota
Herbiconiux sp. YR403 [JUGL]
141903
141992
+
Ser
CGA
[ENA]
¡û
>C161067216
CP014145
Actinomycetota
Microterricola viridarii ERGS5:02 [CP014145]
109351
109440
+
Ser
CGA
[Ensembl]
¡û
>W1610625680
LIAY01000082
Actinomycetota
Microbacteriaceae bacterium BACL25 MAG-120322-bin65 [LIAY]
1175
1086
-
Ser
CGA
[ENA]
¡û
>WENV074338
AACY023969734
Marine microbial communities from Global Ocean Sampling (GOS)
395
304
-
Ser
CGA
[ENA]
>W1610723653
LMDN01000001
Actinomycetota
Leifsonia sp. Root4 [LMDN]
971176
971087
-
Ser
CGA
[ENA]
¡û
>W1610724663
LMEH01000001
Actinomycetota
Leifsonia sp. Root1293 [LMEH]
2096061
2095972
-
Ser
CGA
[ENA]
¡û
>W1610727789
LMGR01000001
Actinomycetota
Leifsonia sp. Root60 [LMGR]
2095920
2095831
-
Ser
CGA
[ENA]
¡û
>W1610735668
LMMR01000006
Actinomycetota
Leifsonia sp. Leaf264 [LMMR]
212956
212867
-
Ser
CGA
[ENA]
¡û
>W1610737820
LMOK01000002
Actinomycetota
Leifsonia sp. Leaf325 [LMOK]
385973
386062
+
Ser
CGA
[ENA]
¡û
>W1710756807
LIAY01000082
Actinomycetota
Microbacteriaceae bacterium BACL25 MAG-120322-bin65 [LIAY]
1175
1086
-
Ser
CGA
[ENA]
¡û
Identical group No.45864 (75 seq.)
>C018277
CP000607
Chlorobiota
Chlorobium phaeovibrioides [CP000607]
671308
671222
-
Ser
CGA
[Ensembl]
¡û
>WENV170613648
FUWD012815672
[FUWD] metagenome; unknown
954
867
-
Ser
CGA
[ENA]
¢þ
>WENV170614861
FUWD012843185
[FUWD] metagenome; unknown
231
142
-
Ser
CGA
[ENA]
¢þ
>W09103339
AAJD01000001
Chlorobiota
Chlorobium phaeovibrioides DSM 265 [AAJD]
290114
290027
-
Ser
CGA
[ENA]
¡û
>SRA1018617
SRR035082.323272
454 Sequencing (SRP001803)
186
99
-
Ser
CGA
[SRA]
>SRA1020168
SRR035083.65597
454 Sequencing (SRP001804)
187
100
-
Ser
CGA
[SRA]
>SRA1020211
SRR035083.74874
454 Sequencing (SRP001804)
2
89
+
Ser
CGA
[SRA]
>SRA1020328
SRR035083.97491
454 Sequencing (SRP001804)
248
161
-
Ser
CGA
[SRA]
>SRA1020355
SRR035083.101244
454 Sequencing (SRP001804)
383
470
+
Ser
CGA
[SRA]
>SRA1020453
SRR035083.117886
454 Sequencing (SRP001804)
248
161
-
Ser
CGA
[SRA]
>SRA1020631
SRR035083.143169
454 Sequencing (SRP001804)
170
257
+
Ser
CGA
[SRA]
>SRA1020850
SRR035083.172977
454 Sequencing (SRP001804)
247
160
-
Ser
CGA
[SRA]
>SRA1020910
SRR035083.183777
454 Sequencing (SRP001804)
175
88
-
Ser
CGA
[SRA]
>SRA1021268
SRR035083.233721
454 Sequencing (SRP001804)
142
55
-
Ser
CGA
[SRA]
>SRA1021296
SRR035083.238462
454 Sequencing (SRP001804)
2
89
+
Ser
CGA
[SRA]
>SRA1021486
SRR035083.264975
454 Sequencing (SRP001804)
76
163
+
Ser
CGA
[SRA]
>SRA1021528
SRR035083.269768
454 Sequencing (SRP001804)
227
140
-
Ser
CGA
[SRA]
>SRA1021573
SRR035083.274911
454 Sequencing (SRP001804)
153
66
-
Ser
CGA
[SRA]
>SRA1021674
SRR035083.291168
454 Sequencing (SRP001804)
2
89
+
Ser
CGA
[SRA]
>SRA1021725
SRR035083.297770
454 Sequencing (SRP001804)
137
224
+
Ser
CGA
[SRA]
>SRA1021782
SRR035083.307980
454 Sequencing (SRP001804)
170
257
+
Ser
CGA
[SRA]
>SRA1021838
SRR035083.315367
454 Sequencing (SRP001804)
182
269
+
Ser
CGA
[SRA]
>SRA1021845
SRR035083.316909
454 Sequencing (SRP001804)
260
173
-
Ser
CGA
[SRA]
>SRA1021895
SRR035083.326032
454 Sequencing (SRP001804)
255
168
-
Ser
CGA
[SRA]
>SRA1021965
SRR035083.332538
454 Sequencing (SRP001804)
136
223
+
Ser
CGA
[SRA]
>SRA1022018
SRR035083.339812
454 Sequencing (SRP001804)
289
376
+
Ser
CGA
[SRA]
>SRA1022096
SRR035083.353177
454 Sequencing (SRP001804)
188
101
-
Ser
CGA
[SRA]
>SRA1022128
SRR035083.356460
454 Sequencing (SRP001804)
136
223
+
Ser
CGA
[SRA]
>SRA1022192
SRR035083.366402
454 Sequencing (SRP001804)
2
89
+
Ser
CGA
[SRA]
>SRA1022313
SRR035083.387122
454 Sequencing (SRP001804)
231
318
+
Ser
CGA
[SRA]
>SRA1022319
SRR035083.388543
454 Sequencing (SRP001804)
164
77
-
Ser
CGA
[SRA]
>SRA1022409
SRR035083.401887
454 Sequencing (SRP001804)
115
28
-
Ser
CGA
[SRA]
>SRA1022465
SRR035083.409044
454 Sequencing (SRP001804)
177
264
+
Ser
CGA
[SRA]
>SRA1022472
SRR035083.410561
454 Sequencing (SRP001804)
136
223
+
Ser
CGA
[SRA]
>SRA1022633
SRR035083.435416
454 Sequencing (SRP001804)
153
66
-
Ser
CGA
[SRA]
>SRA1022755
SRR035083.454326
454 Sequencing (SRP001804)
170
257
+
Ser
CGA
[SRA]
>SRA1023001
SRR035083.503100
454 Sequencing (SRP001804)
17
104
+
Ser
CGA
[SRA]
>SRA1032010
SRR035087.530095
454 Sequencing (SRP001808)
174
261
+
Ser
CGA
[SRA]
>SRA1032712
SRR035088.85422
454 Sequencing (SRP001809)
71
158
+
Ser
CGA
[SRA]
>SRA1033197
SRR035088.194694
454 Sequencing (SRP001809)
133
46
-
Ser
CGA
[SRA]
>SRA1033810
SRR035088.361644
454 Sequencing (SRP001809)
208
121
-
Ser
CGA
[SRA]
>SRA1034800
SRR035089.175675
454 Sequencing (SRP001810)
227
140
-
Ser
CGA
[SRA]
>SRA1035155
SRR035089.248820
454 Sequencing (SRP001810)
158
71
-
Ser
CGA
[SRA]
>SRA1035653
SRR035089.349665
454 Sequencing (SRP001810)
227
140
-
Ser
CGA
[SRA]
>SRA1035833
SRR035089.384809
454 Sequencing (SRP001810)
247
160
-
Ser
CGA
[SRA]
>SRA1036925
SRR035090.39658
454 Sequencing (SRP001811)
143
56
-
Ser
CGA
[SRA]
>SRA1036980
SRR035090.51463
454 Sequencing (SRP001811)
127
40
-
Ser
CGA
[SRA]
>SRA1037194
SRR035090.91293
454 Sequencing (SRP001811)
270
183
-
Ser
CGA
[SRA]
>SRA1037683
SRR035090.173884
454 Sequencing (SRP001811)
97
10
-
Ser
CGA
[SRA]
>SRA1037756
SRR035090.189246
454 Sequencing (SRP001811)
212
125
-
Ser
CGA
[SRA]
>SRA1038174
SRR035090.258309
454 Sequencing (SRP001811)
279
366
+
Ser
CGA
[SRA]
>SRA1038211
SRR035090.265595
454 Sequencing (SRP001811)
246
159
-
Ser
CGA
[SRA]
>SRA1038215
SRR035090.266359
454 Sequencing (SRP001811)
221
308
+
Ser
CGA
[SRA]
>SRA1038358
SRR035090.291392
454 Sequencing (SRP001811)
246
159
-
Ser
CGA
[SRA]
>SRA1038429
SRR035090.302940
454 Sequencing (SRP001811)
197
110
-
Ser
CGA
[SRA]
>SRA1038468
SRR035090.311214
454 Sequencing (SRP001811)
171
84
-
Ser
CGA
[SRA]
>SRA1038622
SRR035090.338693
454 Sequencing (SRP001811)
183
96
-
Ser
CGA
[SRA]
>SRA1038750
SRR035090.359715
454 Sequencing (SRP001811)
269
182
-
Ser
CGA
[SRA]
>SRA1039088
SRR035090.422553
454 Sequencing (SRP001811)
144
231
+
Ser
CGA
[SRA]
>SRA1039140
SRR035090.431249
454 Sequencing (SRP001811)
118
205
+
Ser
CGA
[SRA]
>SRA1039219
SRR035090.446466
454 Sequencing (SRP001811)
132
45
-
Ser
CGA
[SRA]
>SRA1039271
SRR035090.455240
454 Sequencing (SRP001811)
279
192
-
Ser
CGA
[SRA]
>SRA1039288
SRR035090.459082
454 Sequencing (SRP001811)
190
103
-
Ser
CGA
[SRA]
>SRA1039571
SRR035090.518294
454 Sequencing (SRP001811)
249
162
-
Ser
CGA
[SRA]
>SRA1039704
SRR035090.549321
454 Sequencing (SRP001811)
169
256
+
Ser
CGA
[SRA]
>SRA1042854
SRR035091.456188
454 Sequencing (SRP001812)
201
114
-
Ser
CGA
[SRA]
>SRA1046763
SRR035093.378306
454 Sequencing (SRP001814)
71
158
+
Ser
CGA
[SRA]
>SRA1051704
SRR035098.61345
454 Sequencing (SRP001819)
280
193
-
Ser
CGA
[SRA]
>SRA1052244
SRR035098.166566
454 Sequencing (SRP001819)
87
174
+
Ser
CGA
[SRA]
>SRA1053096
SRR035098.335301
454 Sequencing (SRP001819)
87
174
+
Ser
CGA
[SRA]
>SRA1054041
SRR035099.40553
454 Sequencing (SRP001820)
87
174
+
Ser
CGA
[SRA]
>SRA1054055
SRR035099.44197
454 Sequencing (SRP001820)
242
155
-
Ser
CGA
[SRA]
>SRA1054585
SRR035099.168074
454 Sequencing (SRP001820)
28
115
+
Ser
CGA
[SRA]
>SRA1054679
SRR035099.186690
454 Sequencing (SRP001820)
417
504
+
Ser
CGA
[SRA]
>SRA1054826
SRR035099.224055
454 Sequencing (SRP001820)
310
397
+
Ser
CGA
[SRA]
Identical group No.45874 (1 seq.)
>SRA1035312
SRR035089.282353
454 Sequencing (SRP001810)
115
203
+
Ser
CGA
[SRA]
Identical group No.45877 (18 seq.)
>W1711386258
MEFC01000005
Alphaproteobacteria
Rhodospirillales bacterium SCN 65-16 [MEFC]
17749
17838
+
Ser
CGA
[ENA]
¡û
>W1711501632
MKRV01000260
Alphaproteobacteria
Alphaproteobacteria bacterium 65-37 [MKRV]
88596
88507
-
Ser
CGA
[ENA]
¡û
>WENV180020146
FTCV01002431
[FTCV] metagenome; soil
4004
3915
-
Ser
CGA
[ENA]
¢þ
>WENV180262788
OBEQ011417051
[OBEQ] groundwater metagenome; groundwater
1732
1643
-
Ser
CGA
[ENA]
¢þ
>WENV180304240
OBJH01159458
[OBJH] soil metagenome; soil
104
15
-
Ser
CGA
[ENA]
¢þ
>WENV180304680
OBJI01259420
[OBJI] soil metagenome; soil
99
10
-
Ser
CGA
[ENA]
¢þ
>WENV180344570
OBLL01046741
[OBLL] soil metagenome; soil
111
22
-
Ser
CGA
[ENA]
¢þ
>WENV180690527
OCZS010009580
[OCZS] soil metagenome; soil
1622
1533
-
Ser
CGA
[ENA]
¢þ
>W141244536
CAKO01000037
Alphaproteobacteria
Reyranella massiliensis 521 [CAKO]
215907
215818
-
Ser
CGA
[ENA]
¡û
>WENV183671255
ORJL011038937
[ORJL] groundwater metagenome; groundwater
648
559
-
Ser
CGA
[ENA]
¢þ
>WENV183695519
ORMF012403435
[ORMF] groundwater metagenome; groundwater
241
152
-
Ser
CGA
[ENA]
¢þ
>WENV170605966
FUWD010577220
[FUWD] metagenome; unknown
20
109
+
Ser
CGA
[ENA]
¢þ
>WENV170710863
LNFM01002853
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
13240
13329
+
Ser
CGA
[ENA]
¢þ
>WENV170712887
LNFM01019577
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1560
1649
+
Ser
CGA
[ENA]
¢þ
>W1910698362
MEMN01000171
Alphaproteobacteria
Alphaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_66_14 [MEMN]
1621
1532
-
Ser
CGA
[ENA]
¡û
>WENV026056
AACY020936016
Marine microbial communities from Global Ocean Sampling (GOS)
681
772
+
Ser
CGA
[ENA]
>SRA1035578
SRR035089.334186
454 Sequencing (SRP001810)
486
397
-
Ser
CGA
[SRA]
>W1710548218
FODP01000002
Alphaproteobacteria
Rhodospirillales bacterium URHD0017 [FODP]
321934
321845
-
Ser
CGA
[ENA]
¡û
Identical group No.45883 (43 seq.)
>W1710785182
LJHQ01000018
Alphaproteobacteria
Bosea sp. AAP35 [LJHQ]
17856
17767
-
Ser
CGA
[ENA]
¡û
>W1710879515
LMRT01000009
Alphaproteobacteria
Bosea sp. Leaf344 [LMRT]
375934
376023
+
Ser
CGA
[ENA]
¡û
>W1711072937
LSIB01000065
Alphaproteobacteria
Rhizobiales bacterium CCH3-A5 [LSIB]
44275
44364
+
Ser
CGA
[ENA]
¡û
>W1711073148
LSIG01000213
Alphaproteobacteria
Rhizobiales bacterium CCH10-E5 [LSIG]
85769
85858
+
Ser
CGA
[ENA]
¡û
>W1711073318
LSIK01000328
Alphaproteobacteria
Rhizobiales bacterium CCH9-A3 [LSIK]
39817
39728
-
Ser
CGA
[ENA]
¡û
>W1711073820
LSIY01000200
Alphaproteobacteria
Bradyrhizobium sp. CCH1-B1 [LSIY]
39817
39728
-
Ser
CGA
[ENA]
¡û
>W1711074351
LSJL01000107
Alphaproteobacteria
Bradyrhizobium sp. CCH5-A9 [LSJL]
39817
39728
-
Ser
CGA
[ENA]
¡û
>W1711074506
LSJP01000182
Alphaproteobacteria
Rhizobiales bacterium CCH6-A4 [LSJP]
39817
39728
-
Ser
CGA
[ENA]
¡û
>W1711074606
LSJR01000272
Alphaproteobacteria
Rhizobiales bacterium CCH8-D1 [LSJR]
36155
36066
-
Ser
CGA
[ENA]
¡û
>W1711074748
LSJU01001321
Alphaproteobacteria
Erythrobacter donghaensis [LSJU]
3621
3532
-
Ser
CGA
[ENA]
¡û
>W1711074782
LSJV01000177
Alphaproteobacteria
Rhizobiales bacterium CCH11-D2 [LSJV]
39753
39664
-
Ser
CGA
[ENA]
¡û
>W1711074860
LSJX01000192
Alphaproteobacteria
Rhizobiales bacterium CCH2-A4 [LSJX]
36158
36069
-
Ser
CGA
[ENA]
¡û
>W1711075582
LSKN01000245
Alphaproteobacteria
Methylobacterium sp. CCH7-A2 [LSKN]
25907
25996
+
Ser
CGA
[ENA]
¡û
>C171049975
CP016464
Alphaproteobacteria
Bosea sp. RAC05 [CP016464]
4790844
4790755
-
Ser
CGA
-
¡û
>WENV181415460
OGCL01011461
[OGCL] hot springs metagenome; Hot spring water
95
6
-
Ser
CGA
[ENA]
¢þ
>WENV170680942
LFEF01036808
[LFEF] freshwater metagenome; waterbloom
17332
17243
-
Ser
CGA
[ENA]
¢þ
>WENV170714567
LNFM01082162
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1732
1643
-
Ser
CGA
[ENA]
¢þ
>WENV171003159
NNBT01001976
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
55664
55753
+
Ser
CGA
[ENA]
¢þ
>WENV171003818
NNBV01001290
[NNBV] plant metagenome; symbiotic tissue sample KVS11
73906
73817
-
Ser
CGA
[ENA]
¢þ
>W141805323
JPKG01000061
Alphaproteobacteria
Bosea sp. LC85 [JPKG]
80536
80447
-
Ser
CGA
[ENA]
¡û
>W1910635411
LNCQ01000029
Alphaproteobacteria
Bosea sp. FBZP-16 FBZP-16 [LNCQ]
68607
68696
+
Ser
CGA
[ENA]
¡û
>W1810252010
PQFZ01000006
Alphaproteobacteria
Bosea psychrotolerans 1131 [PQFZ]
92241
92330
+
Ser
CGA
[ENA]
¡û
>W1810463354
PZZM01000001
Alphaproteobacteria
Bosea sp. 124 [PZZM]
2557491
2557580
+
Ser
CGA
[ENA]
¡û
>SRA1036016
SRR035089.427391
454 Sequencing (SRP001810)
188
277
+
Ser
CGA
[SRA]
>C161070695
CP014301
Alphaproteobacteria
Bosea sp. PAMC 26642 [CP014301]
3329784
3329695
-
Ser
CGA
[Ensembl]
¡û
>W1610617173
LGSZ01000047
Alphaproteobacteria
Bosea vaviloviae [LGSZ]
122262
122173
-
Ser
CGA
[ENA]
¡û
>W1610648988
LJHQ01000018
Alphaproteobacteria
Bosea sp. AAP35 [LJHQ]
17856
17767
-
Ser
CGA
[ENA]
¡û
>W1610741861
LMRT01000009
Alphaproteobacteria
Bosea sp. Leaf344 [LMRT]
375934
376023
+
Ser
CGA
[ENA]
¡û
>W1610912197
LSIB01000065
Alphaproteobacteria
Rhizobiales bacterium CCH3-A5 [LSIB]
44275
44364
+
Ser
CGA
[ENA]
¡û
>W1610912453
LSIG01000213
Alphaproteobacteria
Rhizobiales bacterium CCH10-E5 [LSIG]
85769
85858
+
Ser
CGA
[ENA]
¡û
>W1610912623
LSIK01000328
Alphaproteobacteria
Rhizobiales bacterium CCH9-A3 [LSIK]
39817
39728
-
Ser
CGA
[ENA]
¡û
>W1610913125
LSIY01000200
Alphaproteobacteria
Bradyrhizobium sp. CCH1-B1 [LSIY]
39817
39728
-
Ser
CGA
[ENA]
¡û
>W1610913656
LSJL01000107
Alphaproteobacteria
Bradyrhizobium sp. CCH5-A9 [LSJL]
39817
39728
-
Ser
CGA
[ENA]
¡û
>W1610913811
LSJP01000182
Alphaproteobacteria
Rhizobiales bacterium CCH6-A4 [LSJP]
39817
39728
-
Ser
CGA
[ENA]
¡û
>W1610913911
LSJR01000272
Alphaproteobacteria
Rhizobiales bacterium CCH8-D1 [LSJR]
36155
36066
-
Ser
CGA
[ENA]
¡û
>W1610914053
LSJU01001321
Alphaproteobacteria
Erythrobacter donghaensis [LSJU]
3621
3532
-
Ser
CGA
[ENA]
¡û
>W1610914087
LSJV01000177
Alphaproteobacteria
Rhizobiales bacterium CCH11-D2 [LSJV]
39753
39664
-
Ser
CGA
[ENA]
¡û
>W1610914165
LSJX01000192
Alphaproteobacteria
Rhizobiales bacterium CCH2-A4 [LSJX]
36158
36069
-
Ser
CGA
[ENA]
¡û
>W1610914887
LSKN01000245
Alphaproteobacteria
Methylobacterium sp. CCH7-A2 [LSKN]
25907
25996
+
Ser
CGA
[ENA]
¡û
>W1710064176
BCQA01000001
Alphaproteobacteria
Bosea sp. BIWAKO-01 [BCQA]
2501631
2501720
+
Ser
CGA
[ENA]
¡û
>W1710538956
FNUY01000006
Alphaproteobacteria
Bosea lathyri [FNUY]
96158
96247
+
Ser
CGA
[ENA]
¡û
>W1710544044
FOAN01000014
Alphaproteobacteria
Bosea lupini [FOAN]
21770
21681
-
Ser
CGA
[ENA]
¡û
>W1710742787
LGSZ01000047
Alphaproteobacteria
Bosea vaviloviae [LGSZ]
122262
122173
-
Ser
CGA
[ENA]
¡û
Identical group No.45884 (1 seq.)
>SRA1036048
SRR035089.434079
454 Sequencing (SRP001810)
197
110
-
Ser
CGA
[SRA]
Identical group No.72782 (1 seq.)
>SRA1034903
SRR035089.194430
454 Sequencing (SRP001810)
127
39
-
Ser
CGA
[SRA]
Identical group No.72784 (1 seq.)
>SRA1035311
SRR035089.282283
454 Sequencing (SRP001810)
300
388
+
Ser
CGA
[SRA]
Identical group No.72787 (1 seq.)
>SRA1035491
SRR035089.317272
454 Sequencing (SRP001810)
21
108
+
Ser
CGA
[SRA]
Identical group No.87066 (1 seq.)
>SRA1035057
SRR035089.227720
454 Sequencing (SRP001810)
450
363
-
Ser
CGA
[SRA]
Identical group No.87068 (10 seq.)
>WENV170627300
FUWD013232509
[FUWD] metagenome; unknown
5509
5422
-
Ser
CGA
[ENA]
¢þ
>SRA1030661
SRR035087.310930
454 Sequencing (SRP001808)
111
24
-
Ser
CGA
[SRA]
>SRA1034025
SRR035088.451778
454 Sequencing (SRP001809)
310
223
-
Ser
CGA
[SRA]
>SRA1035115
SRR035089.240303
454 Sequencing (SRP001810)
127
40
-
Ser
CGA
[SRA]
>SRA1040451
SRR035091.99602
454 Sequencing (SRP001812)
94
7
-
Ser
CGA
[SRA]
>SRA1041823
SRR035091.299683
454 Sequencing (SRP001812)
157
70
-
Ser
CGA
[SRA]
>SRA1042749
SRR035091.440409
454 Sequencing (SRP001812)
456
369
-
Ser
CGA
[SRA]
>SRA1043587
SRR035092.142745
454 Sequencing (SRP001813)
152
239
+
Ser
CGA
[SRA]
>SRA1043715
SRR035092.164413
454 Sequencing (SRP001813)
467
380
-
Ser
CGA
[SRA]
>SRA1049710
SRR035095.123259
454 Sequencing (SRP001816)
526
439
-
Ser
CGA
[SRA]
Identical group No.87077 (1 seq.)
>SRA1035514
SRR035089.321912
454 Sequencing (SRP001810)
35
122
+
Ser
CGA
[SRA]
Identical group No.87097 (3 seq.)
>WENV170598485
FUWD010036982
[FUWD] metagenome; unknown
900
813
-
Ser
CGA
[ENA]
¢þ
>SRA1036295
SRR035089.489354
454 Sequencing (SRP001810)
222
135
-
Ser
CGA
[SRA]
>SRA1044616
SRR035092.310173
454 Sequencing (SRP001813)
361
274
-
Ser
CGA
[SRA]
Identical group No.112594 (1 seq.)
>SRA1035072
SRR035089.231870
454 Sequencing (SRP001810)
291
206
-
Ser
CGA
[SRA]
Identical group No.112633 (3 seq.)
>WENV170613386
FUWD012800775
[FUWD] metagenome; unknown
747
663
-
Ser
CGA
[ENA]
¢þ
>SRA1036254
SRR035089.480948
454 Sequencing (SRP001810)
159
75
-
Ser
CGA
[SRA]
>SRA1048339
SRR035094.150046
454 Sequencing (SRP001815)
408
324
-
Ser
CGA
[SRA]
Identical group No.153880 (5 seq.)
>WENV170612261
FUWD012556861
[FUWD] metagenome; unknown
163
248
+
Ser
CGA
[ENA]
¢þ
>SRA1034751
SRR035089.166571
454 Sequencing (SRP001810)
163
248
+
Ser
CGA
[SRA]
>SRA1042214
SRR035091.356724
454 Sequencing (SRP001812)
276
191
-
Ser
CGA
[SRA]
>SRA1049267
SRR035095.47760
454 Sequencing (SRP001816)
338
253
-
Ser
CGA
[SRA]
>SRA1049325
SRR035095.57068
454 Sequencing (SRP001816)
337
252
-
Ser
CGA
[SRA]
Identical group No.180248 (5 seq.)
>W1711409600
MGOW01000063
Bacillota
Clostridiales bacterium GWE2_32_10 [MGOW]
2360
2276
-
Ser
CGA
[ENA]
¡û
>C151078196
CP011212
Unclassified
candidate division TM6 bacterium GW2011_GWF2_28_16 [CP011212]
360092
360176
+
Ser
CGA
-
¡û
>SRA1035739
SRR035089.366033
454 Sequencing (SRP001810)
182
100
-
Ser
CGA
[SRA]
>W1511599221
LBSB01000016
Unclassified
Candidatus Pacebacteria bacterium GW2011_GWF1_36_5 bacterium GW2011_GWF1_36_5 [LBSB]
12611
12527
-
Ser
CGA
[ENA]
¡û
>W1511601975
LBVQ01000001
Unclassified
Candidatus Pacebacteria bacterium GW2011_GWF2_38_9 bacterium GW2011_GWF2_38_9 [LBVQ]
354723
354807
+
Ser
CGA
[ENA]
¡û
Identical group No.218067 (1 seq.)
>SRA1035921
SRR035089.404125
454 Sequencing (SRP001810)
241
161
-
Ser
CGA
[SRA]
Identical group No.218076 (3 seq.)
>WENV170612299
FUWD012568416
[FUWD] metagenome; unknown
259
176
-
Ser
CGA
[ENA]
¢þ
>SRA1035544
SRR035089.327501
454 Sequencing (SRP001810)
338
255
-
Ser
CGA
[SRA]
>SRA1036078
SRR035089.439204
454 Sequencing (SRP001810)
263
180
-
Ser
CGA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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