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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001810)
Anticodon = GCG
HIT:
14 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.272524 (2 seq.)
>SRA1034283
SRR035089.48182
454 Sequencing (SRP001810)
190
116
-
Arg
GCG
[SRA]
>SRA1034323
SRR035089.57408
454 Sequencing (SRP001810)
190
116
-
Arg
GCG
[SRA]
Identical group No.272614 (3 seq.)
>WENV170619158
FUWD013002813
[FUWD] metagenome; unknown
161
85
-
Arg
GCG
[ENA]
¢þ
>SRA1034783
SRR035089.173386
454 Sequencing (SRP001810)
122
46
-
Arg
GCG
[SRA]
>SRA1042189
SRR035091.351648
454 Sequencing (SRP001812)
86
10
-
Arg
GCG
[SRA]
Identical group No.272690 (1 seq.)
>SRA1035150
SRR035089.247717
454 Sequencing (SRP001810)
72
145
+
Arg
GCG
[SRA]
Identical group No.272762 (3 seq.)
>WENV170677933
LDZT01010097
[LDZT] terrestrial metagenome; oil reservoir sample SB1
8542
8466
-
Arg
GCG
[ENA]
¢þ
>WENV170678415
LDZU01000190
[LDZU] terrestrial metagenome; oil reservoir sample SB2
5363
5287
-
Arg
GCG
[ENA]
¢þ
>SRA1035563
SRR035089.331482
454 Sequencing (SRP001810)
186
110
-
Arg
GCG
[SRA]
Identical group No.272885 (1 seq.)
>SRA1036352
SRR035089.500408
454 Sequencing (SRP001810)
92
18
-
Arg
GCG
[SRA]
Identical group No.272927 (7 seq.)
>WENV170602330
FUWD010226790
[FUWD] metagenome; unknown
257
181
-
Arg
GCG
[ENA]
¢þ
>WENV170622793
FUWD013121141
[FUWD] metagenome; unknown
961
1037
+
Arg
GCG
[ENA]
¢þ
>WENV170631006
FUWD013334893
[FUWD] metagenome; unknown
961
1037
+
Arg
GCG
[ENA]
¢þ
>SRA1017166
SRR035082.92167
454 Sequencing (SRP001803)
284
208
-
Arg
GCG
[SRA]
>SRA1019452
SRR035082.459112
454 Sequencing (SRP001803)
334
258
-
Arg
GCG
[SRA]
>SRA1029778
SRR035087.180138
454 Sequencing (SRP001808)
397
321
-
Arg
GCG
[SRA]
>SRA1036604
SRR035089.560196
454 Sequencing (SRP001810)
332
256
-
Arg
GCG
[SRA]
Identical group No.272941 (4 seq.)
>WENV170612345
FUWD012582798
[FUWD] metagenome; unknown
243
167
-
Arg
GCG
[ENA]
¢þ
>SRA1019645
SRR035082.494849
454 Sequencing (SRP001803)
107
31
-
Arg
GCG
[SRA]
>SRA1036671
SRR035089.579250
454 Sequencing (SRP001810)
243
167
-
Arg
GCG
[SRA]
>SRA1044035
SRR035092.212367
454 Sequencing (SRP001813)
101
25
-
Arg
GCG
[SRA]
Identical group No.272954 (5 seq.)
>WENV170621240
FUWD013053543
[FUWD] metagenome; unknown
276
350
+
Arg
GCG
[ENA]
¢þ
>WENV170629420
FUWD013270042
[FUWD] metagenome; unknown
276
350
+
Arg
GCG
[ENA]
¢þ
>SRA1033146
SRR035088.183200
454 Sequencing (SRP001809)
212
286
+
Arg
GCG
[SRA]
>SRA1036750
SRR035089.605992
454 Sequencing (SRP001810)
71
145
+
Arg
GCG
[SRA]
>SRA1040269
SRR035091.69868
454 Sequencing (SRP001812)
247
321
+
Arg
GCG
[SRA]
Identical group No.272955 (1 seq.)
>SRA1036752
SRR035089.606913
454 Sequencing (SRP001810)
186
110
-
Arg
GCG
[SRA]
Identical group No.272968 (2 seq.)
>WENV170612005
FUWD012480552
[FUWD] metagenome; unknown
22
96
+
Arg
GCG
[ENA]
¢þ
>SRA1036174
SRR035089.462378
454 Sequencing (SRP001810)
29
103
+
Arg
GCG
[SRA]
Identical group No.453464 (14 seq.)
>WENV170620665
FUWD013036333
[FUWD] metagenome; unknown
2914
2989
+
Arg
GCG
[ENA]
¢þ
>WENV170628813
FUWD013253612
[FUWD] metagenome; unknown
2914
2989
+
Arg
GCG
[ENA]
¢þ
>SRA1034188
SRR035089.18145
454 Sequencing (SRP001810)
185
110
-
Arg
GCG
[SRA]
>SRA1035664
SRR035089.351298
454 Sequencing (SRP001810)
168
243
+
Arg
GCG
[SRA]
>SRA1040452
SRR035091.99697
454 Sequencing (SRP001812)
214
289
+
Arg
GCG
[SRA]
>SRA1040715
SRR035091.135942
454 Sequencing (SRP001812)
105
30
-
Arg
GCG
[SRA]
>SRA1040722
SRR035091.136583
454 Sequencing (SRP001812)
187
262
+
Arg
GCG
[SRA]
>SRA1041989
SRR035091.323677
454 Sequencing (SRP001812)
305
380
+
Arg
GCG
[SRA]
>SRA1042021
SRR035091.328963
454 Sequencing (SRP001812)
361
286
-
Arg
GCG
[SRA]
>SRA1042761
SRR035091.442900
454 Sequencing (SRP001812)
128
203
+
Arg
GCG
[SRA]
>SRA1042877
SRR035091.460300
454 Sequencing (SRP001812)
115
190
+
Arg
GCG
[SRA]
>SRA1049954
SRR035095.166872
454 Sequencing (SRP001816)
254
329
+
Arg
GCG
[SRA]
>SRA1050249
SRR035095.221535
454 Sequencing (SRP001816)
98
173
+
Arg
GCG
[SRA]
>SRA1050386
SRR035095.250313
454 Sequencing (SRP001816)
96
171
+
Arg
GCG
[SRA]
Identical group No.453862 (1 seq.)
>SRA1036512
SRR035089.535517
454 Sequencing (SRP001810)
163
90
-
Arg
GCG
[SRA]
Identical group No.654504 (1 seq.)
>SRA1035099
SRR035089.237254
454 Sequencing (SRP001810)
157
83
-
Arg
GCG
[SRA]
Identical group No.654608 (2 seq.)
>WENV170613385
FUWD012800775
[FUWD] metagenome; unknown
826
754
-
Arg
GCG
[ENA]
¢þ
>SRA1036253
SRR035089.480948
454 Sequencing (SRP001810)
238
166
-
Arg
GCG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK