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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001810)
Anticodon = TCA
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.593 (12 seq.)
>WENV180098233
MTBK01235062
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
22656
22753
+
SeC
TCA
[ENA]
¢þ
>WENV183514110
OMKS01012035
[OMKS] sediment metagenome; hot spring sediment
2803
2900
+
SeC
TCA
[ENA]
¢þ
>WENV170598384
FUWD010033747
[FUWD] metagenome; unknown
539
442
-
SeC(p)
TCA
[ENA]
¢þ
>WENV170624228
FUWD013178104
[FUWD] metagenome; unknown
2327
2424
+
SeC(p)
TCA
[ENA]
¢þ
>WENV170632510
FUWD013383714
[FUWD] metagenome; unknown
2327
2424
+
SeC(p)
TCA
[ENA]
¢þ
>SRA1025764
SRR035085.79407
454 Sequencing (SRP001806)
128
225
+
SeC
TCA
[SRA]
>SRA1029380
SRR035087.119274
454 Sequencing (SRP001808)
46
143
+
SeC
TCA
[SRA]
>SRA1031222
SRR035087.394880
454 Sequencing (SRP001808)
123
26
-
SeC
TCA
[SRA]
>SRA1034291
SRR035089.50464
454 Sequencing (SRP001810)
202
299
+
SeC
TCA
[SRA]
>SRA1035179
SRR035089.253968
454 Sequencing (SRP001810)
143
46
-
SeC
TCA
[SRA]
>SRA1035659
SRR035089.350986
454 Sequencing (SRP001810)
229
132
-
SeC
TCA
[SRA]
>SRA1036415
SRR035089.515898
454 Sequencing (SRP001810)
149
52
-
SeC
TCA
[SRA]
Identical group No.595 (1 seq.)
>SRA1035383
SRR035089.294111
454 Sequencing (SRP001810)
132
40
-
SeC
TCA
[SRA]
Identical group No.596 (2 seq.)
>SRA1035997
SRR035089.423459
454 Sequencing (SRP001810)
60
157
+
SeC
TCA
[SRA]
>C131010908
CP003985
Thermodesulfobacteriota
Desulfocapsa sulfexigens DSM 10523 [CP003985]
934727
934630
-
SeC
TCA
[Ensembl]
¡û
Identical group No.597 (7 seq.)
>WENV170616113
FUWD012877926
[FUWD] metagenome; unknown
88
185
+
SeC(p)
TCA
[ENA]
¢þ
>SRA1036283
SRR035089.487651
454 Sequencing (SRP001810)
84
181
+
SeC
TCA
[SRA]
>SRA1048139
SRR035094.114980
454 Sequencing (SRP001815)
97
194
+
SeC
TCA
[SRA]
>SRA1049344
SRR035095.60930
454 Sequencing (SRP001816)
280
183
-
SeC
TCA
[SRA]
>SRA1049614
SRR035095.104829
454 Sequencing (SRP001816)
280
183
-
SeC
TCA
[SRA]
>SRA1049765
SRR035095.136111
454 Sequencing (SRP001816)
280
183
-
SeC
TCA
[SRA]
>SRA1050017
SRR035095.177400
454 Sequencing (SRP001816)
280
183
-
SeC
TCA
[SRA]
Identical group No.598 (5 seq.)
>WENV170001038
AGBJ01001339
[AGBJ] hypersaline lake metagenome; upper interface of the deep-sea hypersaline anoxic lake (DHAL) Thetis located South-East
929
832
-
SeC(p)
TCA
[ENA]
¢þ
>WENV170017152
BARS01058208
[BARS] marine sediment metagenome; marine subsurface sediment at 0.8 meters below seafloor (mbsf), off the Shimokita Peninsula
281
184
-
SeC(p)
TCA
[ENA]
¢þ
>WENV170612343
FUWD012581196
[FUWD] metagenome; unknown
151
54
-
SeC(p)
TCA
[ENA]
¢þ
>SRA1036546
SRR035089.545472
454 Sequencing (SRP001810)
199
102
-
SeC
TCA
[SRA]
>SRA1043181
SRR035092.64786
454 Sequencing (SRP001813)
30
127
+
SeC
TCA
[SRA]
Identical group No.3348 (2 seq.)
>SRA1034232
SRR035089.31943
454 Sequencing (SRP001810)
280
189
-
SeC
TCA
[SRA]
>SRA1035218
SRR035089.262105
454 Sequencing (SRP001810)
280
189
-
SeC
TCA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK