tRNA genes clustered and arranged according to each identical group

454 Sequencing (SRP001810)

Anticodon = TCG

HIT: 32 Group(s).
Download Sequence Representative sequence of each cluster
View ClustalW result
Sort by Identical group No. Sort by the number of tRNAs in the Identical group
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.240942 (1 seq.)
>SRA1036700 SRR035089.587590 454 Sequencing (SRP001810) 226 149 - Arg TCG [SRA]
Identical group No.272401 (6 seq.)
>WENV170601162 FUWD010159189 [FUWD] metagenome; unknown 349 425 + Arg TCG [ENA] ¢þ
>SRA1026400 SRR035085.201976 454 Sequencing (SRP001806) 428 352 - Arg TCG [SRA]
>SRA1031826 SRR035087.495309 454 Sequencing (SRP001808) 152 228 + Arg TCG [SRA]
>SRA1034912 SRR035089.196324 454 Sequencing (SRP001810) 349 425 + Arg TCG [SRA]
>SRA1035872 SRR035089.392884 454 Sequencing (SRP001810) 291 215 - Arg TCG [SRA]
>SRA1036444 SRR035089.525036 454 Sequencing (SRP001810) 89 165 + Arg TCG [SRA]
Identical group No.272449 (23 seq.)
>WENV181413199 OGCK01038251 [OGCK] hot springs metagenome; hot spring sediment 853 929 + Arg TCG [ENA] ¢þ
>WENV170616588 FUWD012892690 [FUWD] metagenome; unknown 15 91 + Arg TCG [ENA] ¢þ
>WENV170617548 FUWD012929501 [FUWD] metagenome; unknown 109 185 + Arg TCG [ENA] ¢þ
>WENV170620355 FUWD013030264 [FUWD] metagenome; unknown 1996 1920 - Arg TCG [ENA] ¢þ
>WENV170624202 FUWD013177659 [FUWD] metagenome; unknown 348 272 - Arg TCG [ENA] ¢þ
>WENV170625247 FUWD013194035 [FUWD] metagenome; unknown 2626 2702 + Arg TCG [ENA] ¢þ
>WENV170628492 FUWD013247842 [FUWD] metagenome; unknown 1996 1920 - Arg TCG [ENA] ¢þ
>WENV170632485 FUWD013383366 [FUWD] metagenome; unknown 348 272 - Arg TCG [ENA] ¢þ
>WENV170633492 FUWD013396979 [FUWD] metagenome; unknown 2626 2702 + Arg TCG [ENA] ¢þ
>SRA1017972 SRR035082.223176 454 Sequencing (SRP001803) 380 304 - Arg TCG [SRA]
>SRA1018286 SRR035082.269545 454 Sequencing (SRP001803) 15 91 + Arg TCG [SRA]
>SRA1018874 SRR035082.361764 454 Sequencing (SRP001803) 241 165 - Arg TCG [SRA]
>SRA1026645 SRR035085.248989 454 Sequencing (SRP001806) 237 161 - Arg TCG [SRA]
>SRA1029242 SRR035087.96635 454 Sequencing (SRP001808) 294 370 + Arg TCG [SRA]
>SRA1029647 SRR035087.156066 454 Sequencing (SRP001808) 139 63 - Arg TCG [SRA]
>SRA1029823 SRR035087.187552 454 Sequencing (SRP001808) 310 234 - Arg TCG [SRA]
>SRA1034567 SRR035089.124575 454 Sequencing (SRP001810) 148 72 - Arg TCG [SRA]
>SRA1034574 SRR035089.126691 454 Sequencing (SRP001810) 274 350 + Arg TCG [SRA]
>SRA1035940 SRR035089.409818 454 Sequencing (SRP001810) 142 66 - Arg TCG [SRA]
>SRA1048204 SRR035094.128844 454 Sequencing (SRP001815) 243 319 + Arg TCG [SRA]
>SRA1049069 SRR035095.14204 454 Sequencing (SRP001816) 147 223 + Arg TCG [SRA]
>SRA1049559 SRR035095.95725 454 Sequencing (SRP001816) 119 195 + Arg TCG [SRA]
>SRA1050302 SRR035095.234322 454 Sequencing (SRP001816) 377 453 + Arg TCG [SRA]
Identical group No.272465 (9 seq.)
>WENV170623352 FUWD013147340 [FUWD] metagenome; unknown 840 764 - Arg TCG [ENA] ¢þ
>WENV170626664 FUWD013228152 [FUWD] metagenome; unknown 137 213 + Arg TCG [ENA] ¢þ
>WENV170626684 FUWD013228563 [FUWD] metagenome; unknown 466 390 - Arg TCG [ENA] ¢þ
>WENV170631617 FUWD013358875 [FUWD] metagenome; unknown 840 764 - Arg TCG [ENA] ¢þ
>SRA1018467 SRR035082.295875 454 Sequencing (SRP001803) 466 390 - Arg TCG [SRA]
>SRA1018647 SRR035082.327414 454 Sequencing (SRP001803) 137 213 + Arg TCG [SRA]
>SRA1026702 SRR035085.264160 454 Sequencing (SRP001806) 274 198 - Arg TCG [SRA]
>SRA1026797 SRR035085.292878 454 Sequencing (SRP001806) 274 198 - Arg TCG [SRA]
>SRA1035792 SRR035089.375895 454 Sequencing (SRP001810) 342 266 - Arg TCG [SRA]
Identical group No.272534 (2 seq.)
>WENV170608015 FUWD010883175 [FUWD] metagenome; unknown 165 241 + Arg TCG [ENA] ¢þ
>SRA1034312 SRR035089.54697 454 Sequencing (SRP001810) 300 226 - Arg TCG [SRA]
Identical group No.272536 (3 seq.)
>WENV170608017 FUWD010883431 [FUWD] metagenome; unknown 293 217 - Arg TCG [ENA] ¢þ
>SRA1034096 SRR035088.485114 454 Sequencing (SRP001809) 255 179 - Arg TCG [SRA]
>SRA1034316 SRR035089.55033 454 Sequencing (SRP001810) 93 17 - Arg TCG [SRA]
Identical group No.272562 (3 seq.)
>WENV170602345 FUWD010229253 [FUWD] metagenome; unknown 574 498 - Arg TCG [ENA] ¢þ
>SRA1034476 SRR035089.105248 454 Sequencing (SRP001810) 205 129 - Arg TCG [SRA]
>SRA1049335 SRR035095.58642 454 Sequencing (SRP001816) 78 154 + Arg TCG [SRA]
Identical group No.272567 (3 seq.)
>WENV170611695 FUWD012376703 [FUWD] metagenome; unknown 112 188 + Arg TCG [ENA] ¢þ
>SRA1019679 SRR035082.500988 454 Sequencing (SRP001803) 398 474 + Arg TCG [SRA]
>SRA1034497 SRR035089.110167 454 Sequencing (SRP001810) 112 188 + Arg TCG [SRA]
Identical group No.272605 (1 seq.)
>SRA1034718 SRR035089.159192 454 Sequencing (SRP001810) 195 119 - Arg TCG [SRA]
Identical group No.272631 (1 seq.)
>SRA1034822 SRR035089.179759 454 Sequencing (SRP001810) 346 272 - Arg TCG [SRA]
Identical group No.272655 (6 seq.)
>W1711581743 MNUN01000140 Unclassified Deltaproteobacteria bacterium CG1_02_45_11 [MNUN] 14112 14188 + Arg TCG [ENA] ¡û
>WENV170603403 FUWD010307867 [FUWD] metagenome; unknown 156 232 + Arg TCG [ENA] ¢þ
>SRA1034942 SRR035089.204274 454 Sequencing (SRP001810) 58 134 + Arg TCG [SRA]
>SRA1049130 SRR035095.25870 454 Sequencing (SRP001816) 75 151 + Arg TCG [SRA]
>SRA1049770 SRR035095.136678 454 Sequencing (SRP001816) 98 22 - Arg TCG [SRA]
>SRA1050374 SRR035095.247242 454 Sequencing (SRP001816) 328 252 - Arg TCG [SRA]
Identical group No.272688 (1 seq.)
>SRA1035131 SRR035089.243027 454 Sequencing (SRP001810) 202 277 + Arg TCG [SRA]
Identical group No.272693 (1 seq.)
>SRA1035159 SRR035089.250113 454 Sequencing (SRP001810) 148 72 - Arg TCG [SRA]
Identical group No.272717 (5 seq.)
>WENV170570324 FLMP01522234 [FLMP] seawater metagenome; seawater 153 229 + Arg TCG [ENA] ¢þ
>W1910067292 BEXT01000001 Thermodesulfobacteriota Desulfonema ishimotonii Tokyo 01 [BEXT] 5291107 5291181 + Arg TCG [ENA] ¡û
>SRA1035303 SRR035089.279780 454 Sequencing (SRP001810) 107 31 - Arg TCG [SRA]
>W1610525580 JPDT01001246 Thermodesulfobacteriota Candidatus Magnetomorum sp. HK-1 [JPDT] 1784 1710 - Arg TCG [ENA] ¡û
>W1710626631 JPDT01001246 Thermodesulfobacteriota Candidatus Magnetomorum sp. HK-1 [JPDT] 1784 1710 - Arg TCG [ENA] ¡û
Identical group No.272728 (15 seq.)
>W131235311 AULM01000003 Thermodesulfobacteriota Desulfatiglans anilini DSM 4660 [AULM] 154296 154372 + Arg TCG [ENA] ¡û
>WENV180345965 OBLN01015377 [OBLN] sediment metagenome; sediment 613 689 + Arg TCG [ENA] ¢þ
>WENV183515301 OMKS01056163 [OMKS] sediment metagenome; hot spring sediment 731 805 + Arg TCG [ENA] ¢þ
>WENV183667469 ORJL010651111 [ORJL] groundwater metagenome; groundwater 677 601 - Arg TCG [ENA] ¢þ
>WENV170625366 FUWD013196638 [FUWD] metagenome; unknown 1842 1766 - Arg TCG [ENA] ¢þ
>WENV170625368 FUWD013196639 [FUWD] metagenome; unknown 145 69 - Arg TCG [ENA] ¢þ
>WENV170633606 FUWD013399285 [FUWD] metagenome; unknown 1842 1766 - Arg TCG [ENA] ¢þ
>WENV170633608 FUWD013399286 [FUWD] metagenome; unknown 145 69 - Arg TCG [ENA] ¢þ
>SRA1031726 SRR035087.477717 454 Sequencing (SRP001808) 276 352 + Arg TCG [SRA]
>SRA1033495 SRR035088.271988 454 Sequencing (SRP001809) 399 323 - Arg TCG [SRA]
>SRA1033594 SRR035088.296744 454 Sequencing (SRP001809) 136 60 - Arg TCG [SRA]
>SRA1034136 SRR035088.504591 454 Sequencing (SRP001809) 200 124 - Arg TCG [SRA]
>SRA1035369 SRR035089.292193 454 Sequencing (SRP001810) 228 304 + Arg TCG [SRA]
>SRA1049929 SRR035095.162444 454 Sequencing (SRP001816) 490 414 - Arg TCG [SRA]
>SRA1050237 SRR035095.218579 454 Sequencing (SRP001816) 154 230 + Arg TCG [SRA]
Identical group No.272772 (8 seq.)
>WENV170608061 FUWD010888068 [FUWD] metagenome; unknown 282 358 + Arg TCG [ENA] ¢þ
>SRA1032461 SRR035088.17532 454 Sequencing (SRP001809) 220 144 - Arg TCG [SRA]
>SRA1032952 SRR035088.138779 454 Sequencing (SRP001809) 221 145 - Arg TCG [SRA]
>SRA1033393 SRR035088.244278 454 Sequencing (SRP001809) 128 52 - Arg TCG [SRA]
>SRA1035642 SRR035089.347394 454 Sequencing (SRP001810) 15 91 + Arg TCG [SRA]
>SRA1035919 SRR035089.403774 454 Sequencing (SRP001810) 306 382 + Arg TCG [SRA]
>SRA1048332 SRR035094.149221 454 Sequencing (SRP001815) 292 216 - Arg TCG [SRA]
>SRA1049794 SRR035095.139692 454 Sequencing (SRP001816) 432 356 - Arg TCG [SRA]
Identical group No.272795 (1 seq.)
>SRA1035788 SRR035089.374719 454 Sequencing (SRP001810) 160 236 + Arg TCG [SRA]
Identical group No.272797 (1 seq.)
>SRA1035807 SRR035089.379118 454 Sequencing (SRP001810) 37 113 + Arg TCG [SRA]
Identical group No.272833 (1 seq.)
>SRA1036067 SRR035089.436707 454 Sequencing (SRP001810) 116 41 - Arg TCG [SRA]
Identical group No.272917 (1 seq.)
>SRA1036550 SRR035089.546811 454 Sequencing (SRP001810) 133 56 - Arg TCG [SRA]
Identical group No.272940 (34 seq.)
>W1710861413 LMDP01000001 Alphaproteobacteria Afipia sp. Root123D2 [LMDP] 937726 937802 + Arg TCG [ENA] ¡û
>W1711073361 LSIM01000051 Alphaproteobacteria Bradyrhizobium sp. CCH4-A6 [LSIM] 11201 11125 - Arg TCG [ENA] ¡û
>W1711073443 LSIN01000329 Alphaproteobacteria Bradyrhizobium sp. CCH10-C7 [LSIN] 13977 13901 - Arg TCG [ENA] ¡û
>W1711501155 MKRG01000105 Alphaproteobacteria Afipia sp. 62-7 [MKRG] 1070 994 - Arg TCG [ENA] ¡û
>W141007441 AGWX01000003 Alphaproteobacteria Afipia broomeae ATCC 49717 [AGWX] 435322 435398 + Arg TCG [ENA] ¡û
>W141007484 AGWY01000006 Alphaproteobacteria Afipia clevelandensis ATCC 49720 [AGWY] 250599 250675 + Arg TCG [ENA] ¡û
>W141007522 AGWZ01000001 Alphaproteobacteria Afipia felis ATCC 53690 [AGWZ] 325350 325426 + Arg TCG [ENA] ¡û
>W141063401 APHQ01000009 Alphaproteobacteria Afipia sp. OHSU_II-uncloned [APHQ] 257110 257034 - Arg TCG [ENA] ¡û
>W141063721 APJE01000019 Alphaproteobacteria Afipia sp. OHSU_I-C6 [APJE] 155542 155466 - Arg TCG [ENA] ¡û
>W141063749 APJF01000004 Alphaproteobacteria Afipia sp. OHSU_I-C4 [APJF] 155556 155480 - Arg TCG [ENA] ¡û
>W141063792 APJG01000004 Alphaproteobacteria Afipia sp. OHSU_I-uncloned [APJG] 173786 173710 - Arg TCG [ENA] ¡û
>W141063869 APJH01000029 Alphaproteobacteria Afipia sp. OHSU_II-C2 [APJH] 173617 173541 - Arg TCG [ENA] ¡û
>W141063898 APJI01000011 Alphaproteobacteria Afipia sp. OHSU_II-C1 [APJI] 11077 11153 + Arg TCG [ENA] ¡û
>W08007833 ABKN01000001 Alphaproteobacteria Afipia carboxidovorans OM5 [ABKN] 1652632 1652708 + Arg TCG [ENA] ¡û
>W141093602 AVBK01000016 Alphaproteobacteria Afipia sp. NBIMC_P1-C1 [AVBK] 89390 89466 + Arg TCG [ENA] ¡û
>W141093664 AVBL01000027 Alphaproteobacteria Afipia sp. NBIMC_P1-C2 [AVBL] 111096 111172 + Arg TCG [ENA] ¡û
>W141093711 AVBM01000025 Alphaproteobacteria Afipia sp. NBIMC_P1-C3 [AVBM] 89392 89468 + Arg TCG [ENA] ¡û
>W141243588 CAJQ02000009 Alphaproteobacteria Afipia birgiae 34632 [CAJQ] 141731 141807 + Arg TCG [ENA] ¡û
>W141261714 CCAZ010000079 Alphaproteobacteria Afipia felis [CCAZ] 7355 7279 - Arg TCG [ENA] ¡û
>WENV183745125 PJUL01002737 [PJUL] feces metagenome; Chicken feces enriched on filter paper 3129 3053 - Arg TCG [ENA] ¢þ
>WENV170132357 CENT01062448 [CENT] marine metagenome genome assembly TARA_007_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 221 145 - Arg TCG [ENA] ¢þ
>WENV170576899 FRDC01002086 [FRDC] freshwater metagenome; water 120605 120681 + Arg TCG [ENA] ¢þ
>WENV170623642 FUWD013161919 [FUWD] metagenome; unknown 636 560 - Arg TCG [ENA] ¢þ
>WENV170631080 FUWD013337790 [FUWD] metagenome; unknown 5126 5202 + Arg TCG [ENA] ¢þ
>C09108132 CP001196 Alphaproteobacteria Afipia carboxidovorans OM5 OM5; ATCC 49405 [CP001196] 1652318 1652394 + Arg TCG - ¡û
>SRA1036667 SRR035089.577838 454 Sequencing (SRP001810) 115 39 - Arg TCG [SRA]
>W10119580 ADVZ01000005 Alphaproteobacteria Afipia sp. 1NLS2 [ADVZ] 293179 293255 + Arg TCG [ENA] ¡û
>C11116282 CP002821 Alphaproteobacteria Afipia carboxidovorans OM4 [CP002821] 2473273 2473197 - Arg TCG [Ensembl] ¡û
>W11125846 ADVZ01000005 Alphaproteobacteria Afipia sp. 1NLS2 [ADVZ] 293179 293255 + Arg TCG [ENA] ¡û
>W11168459 AFOF01000031 Alphaproteobacteria Bradyrhizobiaceae bacterium SG-6C [AFOF] 26314 26390 + Arg TCG [ENA] ¡û
>C121003002 CP002826 Alphaproteobacteria Afipia carboxidovorans OM5 [CP002826] 2472154 2472078 - Arg TCG - ¡û
>W1610723759 LMDP01000001 Alphaproteobacteria Afipia sp. Root123D2 [LMDP] 937726 937802 + Arg TCG [ENA] ¡û
>W1610912666 LSIM01000051 Alphaproteobacteria Bradyrhizobium sp. CCH4-A6 [LSIM] 11201 11125 - Arg TCG [ENA] ¡û
>W1610912748 LSIN01000329 Alphaproteobacteria Bradyrhizobium sp. CCH10-C7 [LSIN] 13977 13901 - Arg TCG [ENA] ¡û
Identical group No.453499 (1 seq.)
>SRA1034395 SRR035089.80690 454 Sequencing (SRP001810) 18 95 + Arg TCG [SRA]
Identical group No.453517 (3 seq.)
>WENV170623305 FUWD013145418 [FUWD] metagenome; unknown 584 509 - Arg TCG [ENA] ¢þ
>WENV170631567 FUWD013357388 [FUWD] metagenome; unknown 584 509 - Arg TCG [ENA] ¢þ
>SRA1034464 SRR035089.101476 454 Sequencing (SRP001810) 455 380 - Arg TCG [SRA]
Identical group No.453546 (1 seq.)
>SRA1034564 SRR035089.123423 454 Sequencing (SRP001810) 313 238 - Arg TCG [SRA]
Identical group No.453687 (1 seq.)
>SRA1035368 SRR035089.292131 454 Sequencing (SRP001810) 303 228 - Arg TCG [SRA]
Identical group No.654469 (14 seq.)
>WENV170626803 FUWD013229616 [FUWD] metagenome; unknown 3279 3207 - Arg TCG [ENA] ¢þ
>SRA1019337 SRR035082.437284 454 Sequencing (SRP001803) 259 331 + Arg TCG [SRA]
>SRA1034701 SRR035089.155824 454 Sequencing (SRP001810) 520 448 - Arg TCG [SRA]
>SRA1040138 SRR035091.46446 454 Sequencing (SRP001812) 128 200 + Arg TCG [SRA]
>SRA1040597 SRR035091.121076 454 Sequencing (SRP001812) 53 125 + Arg TCG [SRA]
>SRA1040962 SRR035091.175134 454 Sequencing (SRP001812) 81 153 + Arg TCG [SRA]
>SRA1041103 SRR035091.196976 454 Sequencing (SRP001812) 81 153 + Arg TCG [SRA]
>SRA1041682 SRR035091.277877 454 Sequencing (SRP001812) 394 322 - Arg TCG [SRA]
>SRA1041935 SRR035091.316663 454 Sequencing (SRP001812) 81 153 + Arg TCG [SRA]
>SRA1042092 SRR035091.337114 454 Sequencing (SRP001812) 579 507 - Arg TCG [SRA]
>SRA1042561 SRR035091.409124 454 Sequencing (SRP001812) 144 72 - Arg TCG [SRA]
>SRA1047860 SRR035094.56725 454 Sequencing (SRP001815) 200 128 - Arg TCG [SRA]
>SRA1048113 SRR035094.112105 454 Sequencing (SRP001815) 355 427 + Arg TCG [SRA]
>SRA1048225 SRR035094.130390 454 Sequencing (SRP001815) 199 127 - Arg TCG [SRA]
Identical group No.654477 (4 seq.)
>WENV170608036 FUWD010885567 [FUWD] metagenome; unknown 98 169 + Arg TCG [ENA] ¢þ
>SRA1020666 SRR035083.149126 454 Sequencing (SRP001804) 47 118 + Arg TCG [SRA]
>SRA1028849 SRR035087.20220 454 Sequencing (SRP001808) 48 119 + Arg TCG [SRA]
>SRA1034798 SRR035089.175415 454 Sequencing (SRP001810) 107 178 + Arg TCG [SRA]
Identical group No.654578 (1 seq.)
>SRA1035899 SRR035089.399192 454 Sequencing (SRP001810) 322 249 - Arg TCG [SRA]
Identical group No.654642 (1 seq.)
>SRA1036587 SRR035089.555048 454 Sequencing (SRP001810) 361 433 + Arg TCG [SRA]
Identical group No.654644 (3 seq.)
>SRA1036613 SRR035089.562762 454 Sequencing (SRP001810) 326 252 - Arg TCG [SRA]
>SRA1044405 SRR035092.274748 454 Sequencing (SRP001813) 46 120 + Arg TCG [SRA]
>SRA1048633 SRR035094.213243 454 Sequencing (SRP001815) 358 432 + Arg TCG [SRA]
Identical group No.654648 (2 seq.)
>SRA1031392 SRR035087.423221 454 Sequencing (SRP001808) 175 102 - Arg TCG [SRA]
>SRA1036646 SRR035089.571334 454 Sequencing (SRP001810) 179 106 - Arg TCG [SRA]
Identical group No.654666 (14 seq.)
>WENV170598273 FUWD010030793 [FUWD] metagenome; unknown 425 352 - Arg TCG [ENA] ¢þ
>WENV170627254 FUWD013232414 [FUWD] metagenome; unknown 16614 16687 + Arg TCG [ENA] ¢þ
>SRA1029857 SRR035087.192877 454 Sequencing (SRP001808) 414 341 - Arg TCG [SRA]
>SRA1035435 SRR035089.303245 454 Sequencing (SRP001810) 239 166 - Arg TCG [SRA]
>SRA1040090 SRR035091.37284 454 Sequencing (SRP001812) 166 93 - Arg TCG [SRA]
>SRA1041338 SRR035091.229546 454 Sequencing (SRP001812) 207 134 - Arg TCG [SRA]
>SRA1042052 SRR035091.332692 454 Sequencing (SRP001812) 282 209 - Arg TCG [SRA]
>SRA1047898 SRR035094.63993 454 Sequencing (SRP001815) 154 81 - Arg TCG [SRA]
>SRA1048596 SRR035094.205672 454 Sequencing (SRP001815) 128 55 - Arg TCG [SRA]
>SRA1049487 SRR035095.85304 454 Sequencing (SRP001816) 129 202 + Arg TCG [SRA]
>SRA1049506 SRR035095.87814 454 Sequencing (SRP001816) 31 104 + Arg TCG [SRA]
>SRA1049682 SRR035095.118550 454 Sequencing (SRP001816) 253 180 - Arg TCG [SRA]
>SRA1049927 SRR035095.162111 454 Sequencing (SRP001816) 122 49 - Arg TCG [SRA]
>SRA1050179 SRR035095.206778 454 Sequencing (SRP001816) 252 325 + Arg TCG [SRA]
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

BACK