This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001811)
Anticodon = CGA
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.24707 (4 seq.)
>WENV170623471
FUWD013152668
[FUWD] metagenome; unknown
958
867
-
Ser
CGA
[ENA]
¢þ
>WENV170631736
FUWD013363568
[FUWD] metagenome; unknown
958
867
-
Ser
CGA
[ENA]
¢þ
>SRA1039788
SRR035090.569474
454 Sequencing (SRP001811)
51
142
+
Ser
CGA
[SRA]
>SRA1042121
SRR035091.341854
454 Sequencing (SRP001812)
148
239
+
Ser
CGA
[SRA]
Identical group No.30430 (9 seq.)
>WENV170620368
FUWD013030516
[FUWD] metagenome; unknown
3090
3000
-
Ser
CGA
[ENA]
¢þ
>WENV170628505
FUWD013248084
[FUWD] metagenome; unknown
3090
3000
-
Ser
CGA
[ENA]
¢þ
>SRA1035770
SRR035089.372855
454 Sequencing (SRP001810)
358
268
-
Ser
CGA
[SRA]
>SRA1037139
SRR035090.80349
454 Sequencing (SRP001811)
225
315
+
Ser
CGA
[SRA]
>SRA1037834
SRR035090.202982
454 Sequencing (SRP001811)
126
216
+
Ser
CGA
[SRA]
>SRA1038847
SRR035090.379074
454 Sequencing (SRP001811)
23
113
+
Ser
CGA
[SRA]
>SRA1039540
SRR035090.511381
454 Sequencing (SRP001811)
49
139
+
Ser
CGA
[SRA]
>SRA1039634
SRR035090.533728
454 Sequencing (SRP001811)
244
154
-
Ser
CGA
[SRA]
>SRA1054742
SRR035099.204644
454 Sequencing (SRP001820)
140
230
+
Ser
CGA
[SRA]
Identical group No.42652 (1 seq.)
>SRA1037078
SRR035090.71014
454 Sequencing (SRP001811)
380
292
-
Ser
CGA
[SRA]
Identical group No.45864 (75 seq.)
>C018277
CP000607
Chlorobiota
Chlorobium phaeovibrioides [CP000607]
671308
671222
-
Ser
CGA
[Ensembl]
¡û
>WENV170613648
FUWD012815672
[FUWD] metagenome; unknown
954
867
-
Ser
CGA
[ENA]
¢þ
>WENV170614861
FUWD012843185
[FUWD] metagenome; unknown
231
142
-
Ser
CGA
[ENA]
¢þ
>W09103339
AAJD01000001
Chlorobiota
Chlorobium phaeovibrioides DSM 265 [AAJD]
290114
290027
-
Ser
CGA
[ENA]
¡û
>SRA1018617
SRR035082.323272
454 Sequencing (SRP001803)
186
99
-
Ser
CGA
[SRA]
>SRA1020168
SRR035083.65597
454 Sequencing (SRP001804)
187
100
-
Ser
CGA
[SRA]
>SRA1020211
SRR035083.74874
454 Sequencing (SRP001804)
2
89
+
Ser
CGA
[SRA]
>SRA1020328
SRR035083.97491
454 Sequencing (SRP001804)
248
161
-
Ser
CGA
[SRA]
>SRA1020355
SRR035083.101244
454 Sequencing (SRP001804)
383
470
+
Ser
CGA
[SRA]
>SRA1020453
SRR035083.117886
454 Sequencing (SRP001804)
248
161
-
Ser
CGA
[SRA]
>SRA1020631
SRR035083.143169
454 Sequencing (SRP001804)
170
257
+
Ser
CGA
[SRA]
>SRA1020850
SRR035083.172977
454 Sequencing (SRP001804)
247
160
-
Ser
CGA
[SRA]
>SRA1020910
SRR035083.183777
454 Sequencing (SRP001804)
175
88
-
Ser
CGA
[SRA]
>SRA1021268
SRR035083.233721
454 Sequencing (SRP001804)
142
55
-
Ser
CGA
[SRA]
>SRA1021296
SRR035083.238462
454 Sequencing (SRP001804)
2
89
+
Ser
CGA
[SRA]
>SRA1021486
SRR035083.264975
454 Sequencing (SRP001804)
76
163
+
Ser
CGA
[SRA]
>SRA1021528
SRR035083.269768
454 Sequencing (SRP001804)
227
140
-
Ser
CGA
[SRA]
>SRA1021573
SRR035083.274911
454 Sequencing (SRP001804)
153
66
-
Ser
CGA
[SRA]
>SRA1021674
SRR035083.291168
454 Sequencing (SRP001804)
2
89
+
Ser
CGA
[SRA]
>SRA1021725
SRR035083.297770
454 Sequencing (SRP001804)
137
224
+
Ser
CGA
[SRA]
>SRA1021782
SRR035083.307980
454 Sequencing (SRP001804)
170
257
+
Ser
CGA
[SRA]
>SRA1021838
SRR035083.315367
454 Sequencing (SRP001804)
182
269
+
Ser
CGA
[SRA]
>SRA1021845
SRR035083.316909
454 Sequencing (SRP001804)
260
173
-
Ser
CGA
[SRA]
>SRA1021895
SRR035083.326032
454 Sequencing (SRP001804)
255
168
-
Ser
CGA
[SRA]
>SRA1021965
SRR035083.332538
454 Sequencing (SRP001804)
136
223
+
Ser
CGA
[SRA]
>SRA1022018
SRR035083.339812
454 Sequencing (SRP001804)
289
376
+
Ser
CGA
[SRA]
>SRA1022096
SRR035083.353177
454 Sequencing (SRP001804)
188
101
-
Ser
CGA
[SRA]
>SRA1022128
SRR035083.356460
454 Sequencing (SRP001804)
136
223
+
Ser
CGA
[SRA]
>SRA1022192
SRR035083.366402
454 Sequencing (SRP001804)
2
89
+
Ser
CGA
[SRA]
>SRA1022313
SRR035083.387122
454 Sequencing (SRP001804)
231
318
+
Ser
CGA
[SRA]
>SRA1022319
SRR035083.388543
454 Sequencing (SRP001804)
164
77
-
Ser
CGA
[SRA]
>SRA1022409
SRR035083.401887
454 Sequencing (SRP001804)
115
28
-
Ser
CGA
[SRA]
>SRA1022465
SRR035083.409044
454 Sequencing (SRP001804)
177
264
+
Ser
CGA
[SRA]
>SRA1022472
SRR035083.410561
454 Sequencing (SRP001804)
136
223
+
Ser
CGA
[SRA]
>SRA1022633
SRR035083.435416
454 Sequencing (SRP001804)
153
66
-
Ser
CGA
[SRA]
>SRA1022755
SRR035083.454326
454 Sequencing (SRP001804)
170
257
+
Ser
CGA
[SRA]
>SRA1023001
SRR035083.503100
454 Sequencing (SRP001804)
17
104
+
Ser
CGA
[SRA]
>SRA1032010
SRR035087.530095
454 Sequencing (SRP001808)
174
261
+
Ser
CGA
[SRA]
>SRA1032712
SRR035088.85422
454 Sequencing (SRP001809)
71
158
+
Ser
CGA
[SRA]
>SRA1033197
SRR035088.194694
454 Sequencing (SRP001809)
133
46
-
Ser
CGA
[SRA]
>SRA1033810
SRR035088.361644
454 Sequencing (SRP001809)
208
121
-
Ser
CGA
[SRA]
>SRA1034800
SRR035089.175675
454 Sequencing (SRP001810)
227
140
-
Ser
CGA
[SRA]
>SRA1035155
SRR035089.248820
454 Sequencing (SRP001810)
158
71
-
Ser
CGA
[SRA]
>SRA1035653
SRR035089.349665
454 Sequencing (SRP001810)
227
140
-
Ser
CGA
[SRA]
>SRA1035833
SRR035089.384809
454 Sequencing (SRP001810)
247
160
-
Ser
CGA
[SRA]
>SRA1036925
SRR035090.39658
454 Sequencing (SRP001811)
143
56
-
Ser
CGA
[SRA]
>SRA1036980
SRR035090.51463
454 Sequencing (SRP001811)
127
40
-
Ser
CGA
[SRA]
>SRA1037194
SRR035090.91293
454 Sequencing (SRP001811)
270
183
-
Ser
CGA
[SRA]
>SRA1037683
SRR035090.173884
454 Sequencing (SRP001811)
97
10
-
Ser
CGA
[SRA]
>SRA1037756
SRR035090.189246
454 Sequencing (SRP001811)
212
125
-
Ser
CGA
[SRA]
>SRA1038174
SRR035090.258309
454 Sequencing (SRP001811)
279
366
+
Ser
CGA
[SRA]
>SRA1038211
SRR035090.265595
454 Sequencing (SRP001811)
246
159
-
Ser
CGA
[SRA]
>SRA1038215
SRR035090.266359
454 Sequencing (SRP001811)
221
308
+
Ser
CGA
[SRA]
>SRA1038358
SRR035090.291392
454 Sequencing (SRP001811)
246
159
-
Ser
CGA
[SRA]
>SRA1038429
SRR035090.302940
454 Sequencing (SRP001811)
197
110
-
Ser
CGA
[SRA]
>SRA1038468
SRR035090.311214
454 Sequencing (SRP001811)
171
84
-
Ser
CGA
[SRA]
>SRA1038622
SRR035090.338693
454 Sequencing (SRP001811)
183
96
-
Ser
CGA
[SRA]
>SRA1038750
SRR035090.359715
454 Sequencing (SRP001811)
269
182
-
Ser
CGA
[SRA]
>SRA1039088
SRR035090.422553
454 Sequencing (SRP001811)
144
231
+
Ser
CGA
[SRA]
>SRA1039140
SRR035090.431249
454 Sequencing (SRP001811)
118
205
+
Ser
CGA
[SRA]
>SRA1039219
SRR035090.446466
454 Sequencing (SRP001811)
132
45
-
Ser
CGA
[SRA]
>SRA1039271
SRR035090.455240
454 Sequencing (SRP001811)
279
192
-
Ser
CGA
[SRA]
>SRA1039288
SRR035090.459082
454 Sequencing (SRP001811)
190
103
-
Ser
CGA
[SRA]
>SRA1039571
SRR035090.518294
454 Sequencing (SRP001811)
249
162
-
Ser
CGA
[SRA]
>SRA1039704
SRR035090.549321
454 Sequencing (SRP001811)
169
256
+
Ser
CGA
[SRA]
>SRA1042854
SRR035091.456188
454 Sequencing (SRP001812)
201
114
-
Ser
CGA
[SRA]
>SRA1046763
SRR035093.378306
454 Sequencing (SRP001814)
71
158
+
Ser
CGA
[SRA]
>SRA1051704
SRR035098.61345
454 Sequencing (SRP001819)
280
193
-
Ser
CGA
[SRA]
>SRA1052244
SRR035098.166566
454 Sequencing (SRP001819)
87
174
+
Ser
CGA
[SRA]
>SRA1053096
SRR035098.335301
454 Sequencing (SRP001819)
87
174
+
Ser
CGA
[SRA]
>SRA1054041
SRR035099.40553
454 Sequencing (SRP001820)
87
174
+
Ser
CGA
[SRA]
>SRA1054055
SRR035099.44197
454 Sequencing (SRP001820)
242
155
-
Ser
CGA
[SRA]
>SRA1054585
SRR035099.168074
454 Sequencing (SRP001820)
28
115
+
Ser
CGA
[SRA]
>SRA1054679
SRR035099.186690
454 Sequencing (SRP001820)
417
504
+
Ser
CGA
[SRA]
>SRA1054826
SRR035099.224055
454 Sequencing (SRP001820)
310
397
+
Ser
CGA
[SRA]
Identical group No.47791 (50 seq.)
>WENV180208864
OBAJ01072789
[OBAJ] marine metagenome; Coastal water
359
270
-
Ser
CGA
[ENA]
¢þ
>WENV180209121
OBAK01019644
[OBAK] marine metagenome; ENVO.00002150
297
208
-
Ser
CGA
[ENA]
¢þ
>WENV180209620
OBAL01007670
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
358
447
+
Ser
CGA
[ENA]
¢þ
>WENV180360998
OBNU01080527
[OBNU] marine metagenome; ENVO:00000021 'freshwater lake
40
129
+
Ser
CGA
[ENA]
¢þ
>WENV180368369
OBOF01071566
[OBOF] marine metagenome; ENVO:00002010
223
312
+
Ser
CGA
[ENA]
¢þ
>WENV180370038
OBOH01022043
[OBOH] marine metagenome; ENVO:00002010
713
624
-
Ser
CGA
[ENA]
¢þ
>WENV180376815
OBOM01101533
[OBOM] marine metagenome; Seawater
25
114
+
Ser
CGA
[ENA]
¢þ
>WENV180391432
OBPN01001191
[OBPN] marine metagenome; seawater
876
787
-
Ser
CGA
[ENA]
¢þ
>WENV180395604
OBPT01053577
[OBPT] marine metagenome; ENVO:00002010 seawater
230
141
-
Ser
CGA
[ENA]
¢þ
>WENV180398837
OBQB01002896
[OBQB] marine metagenome; ENVO.00002150
308
397
+
Ser
CGA
[ENA]
¢þ
>WENV180399287
OBQH01000432
[OBQH] marine metagenome; ENV:00002010
1036
1125
+
Ser
CGA
[ENA]
¢þ
>WENV180399482
OBQO01000002
[OBQO] marine metagenome; ENVO:00002010
40862
40951
+
Ser
CGA
[ENA]
¢þ
>WENV180594017
OCOY01010845
[OCOY] marine metagenome; ENVO:00002010
423
512
+
Ser
CGA
[ENA]
¢þ
>WENV181120455
OEFK01001514
[OEFK] marine metagenome; ENVO:00002010 seawater
1126
1037
-
Ser
CGA
[ENA]
¢þ
>WENV181322642
OFKT01008609
[OFKT] marine metagenome; sea ice
576
665
+
Ser
CGA
[ENA]
¢þ
>WENV181323567
OFKY01007800
[OFKY] marine metagenome; sea ice
657
746
+
Ser
CGA
[ENA]
¢þ
>WENV181324128
OFLC01000219
[OFLC] marine metagenome; melt pond
2784
2873
+
Ser
CGA
[ENA]
¢þ
>WENV181324514
OFLF01000286
[OFLF] marine metagenome; melt pond
1082
993
-
Ser
CGA
[ENA]
¢þ
>WENV181325777
OFLJ01025293
[OFLJ] seawater metagenome; seawater
205
116
-
Ser
CGA
[ENA]
¢þ
>WENV181391453
OFRT01008549
[OFRT] seawater metagenome; seawater
408
497
+
Ser
CGA
[ENA]
¢þ
>WENV181839659
OGVO01005753
[OGVO] freshwater metagenome; freshwater
991
902
-
Ser
CGA
[ENA]
¢þ
>WENV183615721
OOEB01110046
[OOEB] marine metagenome; sea ice
186
275
+
Ser
CGA
[ENA]
¢þ
>WENV183618959
OOFP01008538
[OOFP] marine metagenome; seawater
408
497
+
Ser
CGA
[ENA]
¢þ
>WENV183619631
OOFQ01025781
[OOFQ] marine metagenome; seawater
205
116
-
Ser
CGA
[ENA]
¢þ
>WENV183620902
OOFT01000015
[OOFT] marine metagenome; sea ice
31409
31320
-
Ser
CGA
[ENA]
¢þ
>WENV183622922
OOFW01049545
[OOFW] marine metagenome; sea ice
288
377
+
Ser
CGA
[ENA]
¢þ
>WENV183627768
OOGL01042281
[OOGL] marine metagenome; sea ice
414
503
+
Ser
CGA
[ENA]
¢þ
>WENV170568054
FLMP01014636
[FLMP] seawater metagenome; seawater
736
647
-
Ser
CGA
[ENA]
¢þ
>WENV170598416
FUWD010034788
[FUWD] metagenome; unknown
364
453
+
Ser
CGA
[ENA]
¢þ
>WENV170622386
FUWD013101333
[FUWD] metagenome; unknown
663
752
+
Ser
CGA
[ENA]
¢þ
>WENV170627069
FUWD013231034
[FUWD] metagenome; unknown
2583
2494
-
Ser
CGA
[ENA]
¢þ
>WENV170627613
FUWD013234090
[FUWD] metagenome; unknown
2583
2494
-
Ser
CGA
[ENA]
¢þ
>WENV170630610
FUWD013315750
[FUWD] metagenome; unknown
663
752
+
Ser
CGA
[ENA]
¢þ
>WENV170949620
MEHZ011438101
[MEHZ] marine metagenome; marine surface water
392
481
+
Ser
CGA
[ENA]
¢þ
>SRA1023313
SRR035084.71422
454 Sequencing (SRP001805)
94
5
-
Ser
CGA
[SRA]
>SRA1024335
SRR035084.301604
454 Sequencing (SRP001805)
261
350
+
Ser
CGA
[SRA]
>SRA1024843
SRR035084.418158
454 Sequencing (SRP001805)
39
128
+
Ser
CGA
[SRA]
>SRA1024846
SRR035084.419560
454 Sequencing (SRP001805)
90
179
+
Ser
CGA
[SRA]
>SRA1025356
SRR035084.562500
454 Sequencing (SRP001805)
144
55
-
Ser
CGA
[SRA]
>SRA1038141
SRR035090.253574
454 Sequencing (SRP001811)
178
89
-
Ser
CGA
[SRA]
>SRA1044703
SRR035092.325126
454 Sequencing (SRP001813)
89
178
+
Ser
CGA
[SRA]
>SRA1045243
SRR035093.40477
454 Sequencing (SRP001814)
93
182
+
Ser
CGA
[SRA]
>SRA1047219
SRR035093.485716
454 Sequencing (SRP001814)
81
170
+
Ser
CGA
[SRA]
>SRA1047384
SRR035093.528774
454 Sequencing (SRP001814)
30
119
+
Ser
CGA
[SRA]
>SRA1047576
SRR035093.584987
454 Sequencing (SRP001814)
122
211
+
Ser
CGA
[SRA]
>WENV038599
AACY021946791
Marine microbial communities from Global Ocean Sampling (GOS)
571
480
-
Ser
CGA
[ENA]
>WENV047254
AACY022650676
Marine microbial communities from Global Ocean Sampling (GOS)
151
242
+
Ser
CGA
[ENA]
>W121063460
AJKR01000002
Actinomycetota
Candidatus Aquiluna sp. IMCC13023 [AJKR]
232283
232372
+
Ser
CGA
[ENA]
¡û
>W1610625742
LIBA01000266
Actinomycetota
Microbacteriaceae bacterium BACL28 MAG-120531-bin53 [LIBA]
1090
1179
+
Ser
CGA
[ENA]
¡û
>W1710756869
LIBA01000266
Actinomycetota
Microbacteriaceae bacterium BACL28 MAG-120531-bin53 [LIBA]
1090
1179
+
Ser
CGA
[ENA]
¡û
Identical group No.66798 (1 seq.)
>SRA1039828
SRR035090.579431
454 Sequencing (SRP001811)
427
514
+
Ser
CGA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK