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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001811)
Anticodon = GCT
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.9240 (5 seq.)
>WENV170608007
FUWD010882240
[FUWD] metagenome; unknown
446
353
-
Ser
GCT
[ENA]
¢þ
>SRA1039406
SRR035090.485024
454 Sequencing (SRP001811)
27
120
+
Ser
GCT
[SRA]
>SRA1054310
SRR035099.103887
454 Sequencing (SRP001820)
246
339
+
Ser
GCT
[SRA]
>W10123444
ADZZ01000416
Unclassified
delta proteobacterium NaphS2 [ADZZ]
10833
10740
-
Ser
GCT
[ENA]
¡û
>W11130242
ADZZ01000416
Unclassified
delta proteobacterium NaphS2 [ADZZ]
10833
10740
-
Ser
GCT
[ENA]
¡û
Identical group No.9992 (3 seq.)
>WENV170611729
FUWD012385440
[FUWD] metagenome; unknown
166
259
+
Ser
GCT
[ENA]
¢þ
>SRA1021066
SRR035083.204986
454 Sequencing (SRP001804)
167
260
+
Ser
GCT
[SRA]
>SRA1036909
SRR035090.37467
454 Sequencing (SRP001811)
244
337
+
Ser
GCT
[SRA]
Identical group No.13442 (14 seq.)
>SRA1020334
SRR035083.98303
454 Sequencing (SRP001804)
114
22
-
Ser
GCT
[SRA]
>SRA1020512
SRR035083.127693
454 Sequencing (SRP001804)
112
20
-
Ser
GCT
[SRA]
>SRA1020836
SRR035083.171342
454 Sequencing (SRP001804)
456
364
-
Ser
GCT
[SRA]
>SRA1021244
SRR035083.227941
454 Sequencing (SRP001804)
145
53
-
Ser
GCT
[SRA]
>SRA1021288
SRR035083.237016
454 Sequencing (SRP001804)
145
53
-
Ser
GCT
[SRA]
>SRA1021499
SRR035083.266198
454 Sequencing (SRP001804)
112
20
-
Ser
GCT
[SRA]
>SRA1021954
SRR035083.331676
454 Sequencing (SRP001804)
145
53
-
Ser
GCT
[SRA]
>SRA1022119
SRR035083.355684
454 Sequencing (SRP001804)
428
336
-
Ser
GCT
[SRA]
>SRA1022564
SRR035083.424735
454 Sequencing (SRP001804)
173
265
+
Ser
GCT
[SRA]
>SRA1031978
SRR035087.524255
454 Sequencing (SRP001808)
262
170
-
Ser
GCT
[SRA]
>SRA1037816
SRR035090.200872
454 Sequencing (SRP001811)
150
58
-
Ser
GCT
[SRA]
>SRA1054168
SRR035099.74429
454 Sequencing (SRP001820)
329
237
-
Ser
GCT
[SRA]
>SRA1054199
SRR035099.81380
454 Sequencing (SRP001820)
329
237
-
Ser
GCT
[SRA]
>SRA1054559
SRR035099.163635
454 Sequencing (SRP001820)
380
288
-
Ser
GCT
[SRA]
Identical group No.15763 (3 seq.)
>WENV170607976
FUWD010876762
[FUWD] metagenome; unknown
134
226
+
Ser
GCT
[ENA]
¢þ
>SRA1032517
SRR035088.35468
454 Sequencing (SRP001809)
230
322
+
Ser
GCT
[SRA]
>SRA1039167
SRR035090.436099
454 Sequencing (SRP001811)
7
99
+
Ser
GCT
[SRA]
Identical group No.21427 (4 seq.)
>WENV170612354
FUWD012586587
[FUWD] metagenome; unknown
5
96
+
Ser
GCT
[ENA]
¢þ
>SRA1031433
SRR035087.428209
454 Sequencing (SRP001808)
274
365
+
Ser
GCT
[SRA]
>SRA1036839
SRR035090.20820
454 Sequencing (SRP001811)
5
96
+
Ser
GCT
[SRA]
>SRA1037219
SRR035090.94562
454 Sequencing (SRP001811)
5
96
+
Ser
GCT
[SRA]
Identical group No.23346 (3 seq.)
>WENV170571821
FLOH01000325
[FLOH] marine metagenome; water
28087
28178
+
Ser
GCT
[ENA]
¢þ
>WENV170602724
FUWD010258257
[FUWD] metagenome; unknown
234
325
+
Ser
GCT
[ENA]
¢þ
>SRA1038510
SRR035090.318495
454 Sequencing (SRP001811)
161
70
-
Ser
GCT
[SRA]
Identical group No.24689 (3 seq.)
>WENV170612358
FUWD012587776
[FUWD] metagenome; unknown
36
127
+
Ser
GCT
[ENA]
¢þ
>SRA1037472
SRR035090.139387
454 Sequencing (SRP001811)
111
202
+
Ser
GCT
[SRA]
>SRA1041853
SRR035091.305267
454 Sequencing (SRP001812)
36
127
+
Ser
GCT
[SRA]
Identical group No.24715 (14 seq.)
>WENV170627191
FUWD013231977
[FUWD] metagenome; unknown
6265
6354
+
Ser
GCT
[ENA]
¢þ
>WENV170627194
FUWD013231978
[FUWD] metagenome; unknown
5114
5203
+
Ser
GCT
[ENA]
¢þ
>WENV170632556
FUWD013384438
[FUWD] metagenome; unknown
6265
6354
+
Ser
GCT
[ENA]
¢þ
>WENV170632559
FUWD013384439
[FUWD] metagenome; unknown
5114
5203
+
Ser
GCT
[ENA]
¢þ
>SRA1024493
SRR035084.337607
454 Sequencing (SRP001805)
203
114
-
Ser
GCT
[SRA]
>SRA1025175
SRR035084.508229
454 Sequencing (SRP001805)
286
197
-
Ser
GCT
[SRA]
>SRA1039067
SRR035090.418639
454 Sequencing (SRP001811)
15
104
+
Ser
GCT
[SRA]
>SRA1042178
SRR035091.350297
454 Sequencing (SRP001812)
363
274
-
Ser
GCT
[SRA]
>SRA1051633
SRR035098.44481
454 Sequencing (SRP001819)
121
210
+
Ser
GCT
[SRA]
>SRA1051634
SRR035098.44898
454 Sequencing (SRP001819)
30
119
+
Ser
GCT
[SRA]
>SRA1051990
SRR035098.120459
454 Sequencing (SRP001819)
275
186
-
Ser
GCT
[SRA]
>SRA1052211
SRR035098.160828
454 Sequencing (SRP001819)
30
119
+
Ser
GCT
[SRA]
>SRA1052525
SRR035098.219994
454 Sequencing (SRP001819)
263
174
-
Ser
GCT
[SRA]
>SRA1052713
SRR035098.256981
454 Sequencing (SRP001819)
239
150
-
Ser
GCT
[SRA]
Identical group No.37797 (5 seq.)
>WENV170612963
FUWD012766822
[FUWD] metagenome; unknown
389
479
+
Ser
GCT
[ENA]
¢þ
>SRA1037441
SRR035090.135999
454 Sequencing (SRP001811)
80
170
+
Ser
GCT
[SRA]
>SRA1037481
SRR035090.140803
454 Sequencing (SRP001811)
80
170
+
Ser
GCT
[SRA]
>SRA1038069
SRR035090.241591
454 Sequencing (SRP001811)
81
171
+
Ser
GCT
[SRA]
>SRA1038326
SRR035090.288285
454 Sequencing (SRP001811)
80
170
+
Ser
GCT
[SRA]
Identical group No.58005 (5 seq.)
>WENV170613340
FUWD012798001
[FUWD] metagenome; unknown
493
404
-
Ser
GCT
[ENA]
¢þ
>SRA1021797
SRR035083.311454
454 Sequencing (SRP001804)
228
317
+
Ser
GCT
[SRA]
>SRA1021860
SRR035083.319461
454 Sequencing (SRP001804)
227
316
+
Ser
GCT
[SRA]
>SRA1037893
SRR035090.214848
454 Sequencing (SRP001811)
93
4
-
Ser
GCT
[SRA]
>SRA1039354
SRR035090.474897
454 Sequencing (SRP001811)
93
4
-
Ser
GCT
[SRA]
Identical group No.66792 (1 seq.)
>SRA1037102
SRR035090.73789
454 Sequencing (SRP001811)
234
145
-
Ser
GCT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK