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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001811)
Anticodon = GTA
HIT:
15 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.131547 (3 seq.)
>WENV170605031
FUWD010442143
[FUWD] metagenome; unknown
513
598
+
Tyr
GTA
[ENA]
¢þ
>SRA1021175
SRR035083.219750
454 Sequencing (SRP001804)
173
258
+
Tyr
GTA
[SRA]
>SRA1037523
SRR035090.147402
454 Sequencing (SRP001811)
175
260
+
Tyr
GTA
[SRA]
Identical group No.145012 (4 seq.)
>SRA1020491
SRR035083.122621
454 Sequencing (SRP001804)
358
444
+
Tyr
GTA
[SRA]
>SRA1038034
SRR035090.236153
454 Sequencing (SRP001811)
255
169
-
Tyr
GTA
[SRA]
>SRA1038738
SRR035090.357126
454 Sequencing (SRP001811)
235
321
+
Tyr
GTA
[SRA]
>SRA1039722
SRR035090.553799
454 Sequencing (SRP001811)
377
463
+
Tyr
GTA
[SRA]
Identical group No.153860 (75 seq.)
>WENV170613993
FUWD012823312
[FUWD] metagenome; unknown
14589
14674
+
Tyr
GTA
[ENA]
¢þ
>SRA1017489
SRR035082.148445
454 Sequencing (SRP001803)
141
56
-
Tyr
GTA
[SRA]
>SRA1019126
SRR035082.406202
454 Sequencing (SRP001803)
95
10
-
Tyr
GTA
[SRA]
>SRA1019876
SRR035083.10803
454 Sequencing (SRP001804)
247
162
-
Tyr
GTA
[SRA]
>SRA1019903
SRR035083.18618
454 Sequencing (SRP001804)
224
139
-
Tyr
GTA
[SRA]
>SRA1020090
SRR035083.56609
454 Sequencing (SRP001804)
114
199
+
Tyr
GTA
[SRA]
>SRA1020107
SRR035083.58046
454 Sequencing (SRP001804)
169
84
-
Tyr
GTA
[SRA]
>SRA1020358
SRR035083.101598
454 Sequencing (SRP001804)
249
164
-
Tyr
GTA
[SRA]
>SRA1020409
SRR035083.110863
454 Sequencing (SRP001804)
247
162
-
Tyr
GTA
[SRA]
>SRA1020768
SRR035083.162002
454 Sequencing (SRP001804)
167
82
-
Tyr
GTA
[SRA]
>SRA1020769
SRR035083.162038
454 Sequencing (SRP001804)
31
116
+
Tyr
GTA
[SRA]
>SRA1020916
SRR035083.184374
454 Sequencing (SRP001804)
460
543
+
Tyr
GTA
[SRA]
>SRA1021041
SRR035083.202516
454 Sequencing (SRP001804)
188
103
-
Tyr
GTA
[SRA]
>SRA1021530
SRR035083.269832
454 Sequencing (SRP001804)
244
329
+
Tyr
GTA
[SRA]
>SRA1021576
SRR035083.275398
454 Sequencing (SRP001804)
14
99
+
Tyr
GTA
[SRA]
>SRA1021731
SRR035083.298522
454 Sequencing (SRP001804)
334
419
+
Tyr
GTA
[SRA]
>SRA1022124
SRR035083.356142
454 Sequencing (SRP001804)
104
19
-
Tyr
GTA
[SRA]
>SRA1022315
SRR035083.387277
454 Sequencing (SRP001804)
120
35
-
Tyr
GTA
[SRA]
>SRA1022445
SRR035083.406043
454 Sequencing (SRP001804)
224
309
+
Tyr
GTA
[SRA]
>SRA1022483
SRR035083.412217
454 Sequencing (SRP001804)
45
130
+
Tyr
GTA
[SRA]
>SRA1022786
SRR035083.459930
454 Sequencing (SRP001804)
409
324
-
Tyr
GTA
[SRA]
>SRA1026320
SRR035085.185260
454 Sequencing (SRP001806)
345
260
-
Tyr
GTA
[SRA]
>SRA1028806
SRR035087.12237
454 Sequencing (SRP001808)
142
227
+
Tyr
GTA
[SRA]
>SRA1029074
SRR035087.69287
454 Sequencing (SRP001808)
131
216
+
Tyr
GTA
[SRA]
>SRA1029251
SRR035087.98062
454 Sequencing (SRP001808)
81
166
+
Tyr
GTA
[SRA]
>SRA1032625
SRR035088.66700
454 Sequencing (SRP001809)
55
140
+
Tyr
GTA
[SRA]
>SRA1032720
SRR035088.86779
454 Sequencing (SRP001809)
207
122
-
Tyr
GTA
[SRA]
>SRA1032862
SRR035088.118389
454 Sequencing (SRP001809)
1
86
+
Tyr
GTA
[SRA]
>SRA1032881
SRR035088.121271
454 Sequencing (SRP001809)
79
164
+
Tyr
GTA
[SRA]
>SRA1033009
SRR035088.151199
454 Sequencing (SRP001809)
262
177
-
Tyr
GTA
[SRA]
>SRA1033433
SRR035088.256733
454 Sequencing (SRP001809)
142
227
+
Tyr
GTA
[SRA]
>SRA1034203
SRR035089.22523
454 Sequencing (SRP001810)
13
98
+
Tyr
GTA
[SRA]
>SRA1035266
SRR035089.270799
454 Sequencing (SRP001810)
91
6
-
Tyr
GTA
[SRA]
>SRA1036339
SRR035089.498190
454 Sequencing (SRP001810)
189
274
+
Tyr
GTA
[SRA]
>SRA1036876
SRR035090.30685
454 Sequencing (SRP001811)
13
98
+
Tyr
GTA
[SRA]
>SRA1036929
SRR035090.40403
454 Sequencing (SRP001811)
271
356
+
Tyr
GTA
[SRA]
>SRA1036951
SRR035090.44248
454 Sequencing (SRP001811)
99
14
-
Tyr
GTA
[SRA]
>SRA1036974
SRR035090.49611
454 Sequencing (SRP001811)
98
13
-
Tyr
GTA
[SRA]
>SRA1037011
SRR035090.58581
454 Sequencing (SRP001811)
230
315
+
Tyr
GTA
[SRA]
>SRA1037066
SRR035090.69197
454 Sequencing (SRP001811)
13
98
+
Tyr
GTA
[SRA]
>SRA1037332
SRR035090.117969
454 Sequencing (SRP001811)
36
121
+
Tyr
GTA
[SRA]
>SRA1037555
SRR035090.153420
454 Sequencing (SRP001811)
205
290
+
Tyr
GTA
[SRA]
>SRA1037573
SRR035090.157200
454 Sequencing (SRP001811)
173
88
-
Tyr
GTA
[SRA]
>SRA1037767
SRR035090.191656
454 Sequencing (SRP001811)
374
459
+
Tyr
GTA
[SRA]
>SRA1037962
SRR035090.226922
454 Sequencing (SRP001811)
173
88
-
Tyr
GTA
[SRA]
>SRA1038088
SRR035090.243541
454 Sequencing (SRP001811)
232
317
+
Tyr
GTA
[SRA]
>SRA1038149
SRR035090.254382
454 Sequencing (SRP001811)
25
110
+
Tyr
GTA
[SRA]
>SRA1038443
SRR035090.305700
454 Sequencing (SRP001811)
25
110
+
Tyr
GTA
[SRA]
>SRA1038850
SRR035090.379507
454 Sequencing (SRP001811)
152
67
-
Tyr
GTA
[SRA]
>SRA1038968
SRR035090.401944
454 Sequencing (SRP001811)
147
62
-
Tyr
GTA
[SRA]
>SRA1039072
SRR035090.419604
454 Sequencing (SRP001811)
25
110
+
Tyr
GTA
[SRA]
>SRA1039227
SRR035090.446979
454 Sequencing (SRP001811)
133
48
-
Tyr
GTA
[SRA]
>SRA1039500
SRR035090.504205
454 Sequencing (SRP001811)
377
462
+
Tyr
GTA
[SRA]
>SRA1039533
SRR035090.509368
454 Sequencing (SRP001811)
210
125
-
Tyr
GTA
[SRA]
>SRA1039719
SRR035090.553612
454 Sequencing (SRP001811)
287
372
+
Tyr
GTA
[SRA]
>SRA1039889
SRR035090.593658
454 Sequencing (SRP001811)
25
110
+
Tyr
GTA
[SRA]
>SRA1045891
SRR035093.190883
454 Sequencing (SRP001814)
141
56
-
Tyr
GTA
[SRA]
>SRA1046201
SRR035093.253138
454 Sequencing (SRP001814)
136
221
+
Tyr
GTA
[SRA]
>SRA1046637
SRR035093.349835
454 Sequencing (SRP001814)
135
50
-
Tyr
GTA
[SRA]
>SRA1053338
SRR035098.386680
454 Sequencing (SRP001819)
143
58
-
Tyr
GTA
[SRA]
>SRA1054033
SRR035099.38386
454 Sequencing (SRP001820)
424
339
-
Tyr
GTA
[SRA]
>SRA1054079
SRR035099.52193
454 Sequencing (SRP001820)
175
90
-
Tyr
GTA
[SRA]
>SRA1054175
SRR035099.76427
454 Sequencing (SRP001820)
374
289
-
Tyr
GTA
[SRA]
>SRA1054256
SRR035099.93112
454 Sequencing (SRP001820)
156
71
-
Tyr
GTA
[SRA]
>SRA1054358
SRR035099.115116
454 Sequencing (SRP001820)
156
241
+
Tyr
GTA
[SRA]
>SRA1054375
SRR035099.118584
454 Sequencing (SRP001820)
271
186
-
Tyr
GTA
[SRA]
>SRA1054563
SRR035099.164290
454 Sequencing (SRP001820)
215
300
+
Tyr
GTA
[SRA]
>SRA1054591
SRR035099.169747
454 Sequencing (SRP001820)
364
279
-
Tyr
GTA
[SRA]
>SRA1054609
SRR035099.172210
454 Sequencing (SRP001820)
231
146
-
Tyr
GTA
[SRA]
>SRA1054649
SRR035099.181707
454 Sequencing (SRP001820)
186
271
+
Tyr
GTA
[SRA]
>SRA1054684
SRR035099.188520
454 Sequencing (SRP001820)
156
241
+
Tyr
GTA
[SRA]
>SRA1054699
SRR035099.190338
454 Sequencing (SRP001820)
237
152
-
Tyr
GTA
[SRA]
>SRA1054746
SRR035099.205446
454 Sequencing (SRP001820)
534
449
-
Tyr
GTA
[SRA]
>SRA1054759
SRR035099.207667
454 Sequencing (SRP001820)
286
371
+
Tyr
GTA
[SRA]
>SRA1054844
SRR035099.228704
454 Sequencing (SRP001820)
296
211
-
Tyr
GTA
[SRA]
Identical group No.155460 (18 seq.)
>WENV180356754
OBNL01016985
[OBNL] marine metagenome; ENVO:00002010
267
350
+
Tyr
GTA
[ENA]
¢þ
>WENV181309544
OFIW01004990
[OFIW] marine metagenome; seawater
651
734
+
Tyr
GTA
[ENA]
¢þ
>WENV181321833
OFKN01017631
[OFKN] marine metagenome; seawater
163
246
+
Tyr
GTA
[ENA]
¢þ
>WENV181392472
OFRW01057322
[OFRW] seawater metagenome; seawater
182
265
+
Tyr
GTA
[ENA]
¢þ
>WENV183619743
OOFQ01041829
[OOFQ] marine metagenome; seawater
134
51
-
Tyr
GTA
[ENA]
¢þ
>WENV183623898
OOGB01002430
[OOGB] marine metagenome; sea ice
715
798
+
Tyr
GTA
[ENA]
¢þ
>WENV183626675
OOGJ01009204
[OOGJ] marine metagenome; seawater
395
478
+
Tyr
GTA
[ENA]
¢þ
>WENV183627203
OOGK01060162
[OOGK] marine metagenome; seawater
182
265
+
Tyr
GTA
[ENA]
¢þ
>WENV183630010
OOGR01003514
[OOGR] marine metagenome; seawater
652
735
+
Tyr
GTA
[ENA]
¢þ
>WENV170568461
FLMP01041586
[FLMP] seawater metagenome; seawater
374
291
-
Tyr
GTA
[ENA]
¢þ
>WENV170571837
FLOH01000338
[FLOH] marine metagenome; water
30632
30715
+
Tyr
GTA
[ENA]
¢þ
>WENV170571850
FLOH01000344
[FLOH] marine metagenome; water
65898
65815
-
Tyr
GTA
[ENA]
¢þ
>WENV170626994
FUWD013230650
[FUWD] metagenome; unknown
8102
8019
-
Tyr
GTA
[ENA]
¢þ
>WENV170951447
MEHZ011554173
[MEHZ] marine metagenome; marine surface water
3
86
+
Tyr
GTA
[ENA]
¢þ
>WENV170951792
MEHZ011569989
[MEHZ] marine metagenome; marine surface water
1002
1085
+
Tyr
GTA
[ENA]
¢þ
>SRA1023519
SRR035084.115854
454 Sequencing (SRP001805)
88
171
+
Tyr
GTA
[SRA]
>SRA1030442
SRR035087.280058
454 Sequencing (SRP001808)
194
111
-
Tyr
GTA
[SRA]
>SRA1039473
SRR035090.499321
454 Sequencing (SRP001811)
103
20
-
Tyr
GTA
[SRA]
Identical group No.165618 (3 seq.)
>WENV170599983
FUWD010101108
[FUWD] metagenome; unknown
331
415
+
Tyr
GTA
[ENA]
¢þ
>SRA1033947
SRR035088.419530
454 Sequencing (SRP001809)
58
142
+
Tyr
GTA
[SRA]
>SRA1037134
SRR035090.78967
454 Sequencing (SRP001811)
169
85
-
Tyr
GTA
[SRA]
Identical group No.165634 (5 seq.)
>WENV170601728
FUWD010190565
[FUWD] metagenome; unknown
391
306
-
Tyr
GTA
[ENA]
¢þ
>WENV170622520
FUWD013107626
[FUWD] metagenome; unknown
864
949
+
Tyr
GTA
[ENA]
¢þ
>WENV170630744
FUWD013321942
[FUWD] metagenome; unknown
864
949
+
Tyr
GTA
[ENA]
¢þ
>SRA1036881
SRR035090.30954
454 Sequencing (SRP001811)
394
309
-
Tyr
GTA
[SRA]
>SRA1038413
SRR035090.299781
454 Sequencing (SRP001811)
401
316
-
Tyr
GTA
[SRA]
Identical group No.165651 (2 seq.)
>WENV170605172
FUWD010456128
[FUWD] metagenome; unknown
512
427
-
Tyr
GTA
[ENA]
¢þ
>SRA1039244
SRR035090.450275
454 Sequencing (SRP001811)
36
121
+
Tyr
GTA
[SRA]
Identical group No.174295 (1 seq.)
>SRA1039132
SRR035090.429851
454 Sequencing (SRP001811)
313
395
+
Tyr
GTA
[SRA]
Identical group No.180221 (30 seq.)
>W1711393275
MEOL01000020
Bacteroidota
Bacteroidetes bacterium GWF2_41_31 [MEOL]
40143
40059
-
Tyr
GTA
[ENA]
¡û
>W1711583764
MNXP01000068
Bacteroidota
Bacteroidetes bacterium CG2_30_33_31 [MNXP]
59122
59038
-
Tyr
GTA
[ENA]
¡û
>WENV180043660
LQAI01005069
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
1205
1123
-
Tyr
GTA
[ENA]
¢þ
>WENV180080218
MPMB02213509
[MPMB] marine metagenome; 300 m water sample filtered on 0.2 um supor filter
242
324
+
Tyr
GTA
[ENA]
¢þ
>WENV180317302
OBKJ01105510
[OBKJ] metagenome; hydrothermal vent
58
140
+
Tyr
GTA
[ENA]
¢þ
>WENV183514947
OMKS01039026
[OMKS] sediment metagenome; hot spring sediment
1569
1487
-
Tyr
GTA
[ENA]
¢þ
>WENV183802905
PVBE010796474
[PVBE] marine metagenome; water
13677
13595
-
Tyr
GTA
[ENA]
¢þ
>WENV170209736
CEPV01083215
[CEPV] marine metagenome genome assembly TARA_039_MES_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
442
360
-
Tyr
GTA
[ENA]
¢þ
>WENV170383119
CETX01076346
[CETX] marine metagenome genome assembly TARA_138_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
289
371
+
Tyr
GTA
[ENA]
¢þ
>WENV170535974
CEWP01132079
[CEWP] marine metagenome genome assembly TARA_067_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
306
224
-
Tyr
GTA
[ENA]
¢þ
>WENV170572734
FLOH01001235
[FLOH] marine metagenome; water
30545
30463
-
Tyr
GTA
[ENA]
¢þ
>WENV170599932
FUWD010098725
[FUWD] metagenome; unknown
529
611
+
Tyr
GTA
[ENA]
¢þ
>WENV170616556
FUWD012891056
[FUWD] metagenome; unknown
89
171
+
Tyr
GTA
[ENA]
¢þ
>WENV170617824
FUWD012937803
[FUWD] metagenome; unknown
602
518
-
Tyr
GTA
[ENA]
¢þ
>WENV170620138
FUWD013026425
[FUWD] metagenome; unknown
101
185
+
Tyr
GTA
[ENA]
¢þ
>WENV170628274
FUWD013244266
[FUWD] metagenome; unknown
101
185
+
Tyr
GTA
[ENA]
¢þ
>WENV170696919
LGVF01061249
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
372
454
+
Tyr
GTA
[ENA]
¢þ
>SRA1032564
SRR035088.47772
454 Sequencing (SRP001809)
357
273
-
Tyr
GTA
[SRA]
>SRA1032967
SRR035088.141396
454 Sequencing (SRP001809)
224
140
-
Tyr
GTA
[SRA]
>SRA1033103
SRR035088.175050
454 Sequencing (SRP001809)
96
180
+
Tyr
GTA
[SRA]
>SRA1033409
SRR035088.248614
454 Sequencing (SRP001809)
126
210
+
Tyr
GTA
[SRA]
>SRA1034162
SRR035089.6568
454 Sequencing (SRP001810)
217
133
-
Tyr
GTA
[SRA]
>SRA1034819
SRR035089.178936
454 Sequencing (SRP001810)
342
426
+
Tyr
GTA
[SRA]
>SRA1035315
SRR035089.282770
454 Sequencing (SRP001810)
244
328
+
Tyr
GTA
[SRA]
>SRA1036561
SRR035089.549201
454 Sequencing (SRP001810)
2
86
+
Tyr
GTA
[SRA]
>SRA1036821
SRR035090.14683
454 Sequencing (SRP001811)
106
190
+
Tyr
GTA
[SRA]
>SRA1036851
SRR035090.24995
454 Sequencing (SRP001811)
106
190
+
Tyr
GTA
[SRA]
>SRA1037621
SRR035090.164165
454 Sequencing (SRP001811)
106
190
+
Tyr
GTA
[SRA]
>SRA1038876
SRR035090.385737
454 Sequencing (SRP001811)
248
164
-
Tyr
GTA
[SRA]
>SRA1050294
SRR035095.232947
454 Sequencing (SRP001816)
204
120
-
Tyr
GTA
[SRA]
Identical group No.198102 (4 seq.)
>WENV170608080
FUWD010890787
[FUWD] metagenome; unknown
261
345
+
Tyr
GTA
[ENA]
¢þ
>WENV170619372
FUWD013011899
[FUWD] metagenome; unknown
168
84
-
Tyr
GTA
[ENA]
¢þ
>SRA1037989
SRR035090.230304
454 Sequencing (SRP001811)
261
345
+
Tyr
GTA
[SRA]
>SRA1047765
SRR035094.36781
454 Sequencing (SRP001815)
178
94
-
Tyr
GTA
[SRA]
Identical group No.198189 (4 seq.)
>WENV170612370
FUWD012590453
[FUWD] metagenome; unknown
152
236
+
Tyr
GTA
[ENA]
¢þ
>SRA1020014
SRR035083.41494
454 Sequencing (SRP001804)
75
159
+
Tyr
GTA
[SRA]
>SRA1020732
SRR035083.157043
454 Sequencing (SRP001804)
174
90
-
Tyr
GTA
[SRA]
>SRA1038027
SRR035090.235582
454 Sequencing (SRP001811)
168
252
+
Tyr
GTA
[SRA]
Identical group No.210153 (1 seq.)
>SRA1037842
SRR035090.203919
454 Sequencing (SRP001811)
336
252
-
Tyr
GTA
[SRA]
Identical group No.210154 (2 seq.)
>SRA1037870
SRR035090.209516
454 Sequencing (SRP001811)
375
458
+
Tyr
GTA
[SRA]
>C131010876
CP003985
Thermodesulfobacteriota
Desulfocapsa sulfexigens DSM 10523 [CP003985]
2296184
2296268
+
Tyr
GTA
[Ensembl]
¡û
Identical group No.710782 (2 seq.)
>WENV170607799
FUWD010857038
[FUWD] metagenome; unknown
236
308
+
Tyr
GTA
[ENA]
¢þ
>SRA1037029
SRR035090.61528
454 Sequencing (SRP001811)
151
79
-
Tyr
GTA
[SRA]
Identical group No.804988 (3 seq.)
>WENV170603347
FUWD010303777
[FUWD] metagenome; unknown
362
292
-
Tyr
GTA
[ENA]
¢þ
>SRA1037023
SRR035090.60519
454 Sequencing (SRP001811)
111
41
-
Tyr
GTA
[SRA]
>SRA1042375
SRR035091.379048
454 Sequencing (SRP001812)
180
250
+
Tyr
GTA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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