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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001811)
Anticodon = TCG
HIT:
13 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.263971 (1 seq.)
>SRA1037741
SRR035090.185398
454 Sequencing (SRP001811)
405
331
-
Arg
TCG
[SRA]
Identical group No.300381 (5 seq.)
>WENV170611990
FUWD012477242
[FUWD] metagenome; unknown
346
270
-
Arg
TCG
[ENA]
¢þ
>SRA1029649
SRR035087.156412
454 Sequencing (SRP001808)
347
271
-
Arg
TCG
[SRA]
>SRA1038681
SRR035090.348529
454 Sequencing (SRP001811)
424
500
+
Arg
TCG
[SRA]
>SRA1054624
SRR035099.176459
454 Sequencing (SRP001820)
130
206
+
Arg
TCG
[SRA]
>SRA1054730
SRR035099.199477
454 Sequencing (SRP001820)
110
34
-
Arg
TCG
[SRA]
Identical group No.300720 (4 seq.)
>WENV170621823
FUWD013074655
[FUWD] metagenome; unknown
425
501
+
Arg
TCG
[ENA]
¢þ
>WENV170630024
FUWD013290206
[FUWD] metagenome; unknown
425
501
+
Arg
TCG
[ENA]
¢þ
>SRA1031679
SRR035087.470085
454 Sequencing (SRP001808)
104
180
+
Arg
TCG
[SRA]
>SRA1037725
SRR035090.180704
454 Sequencing (SRP001811)
164
240
+
Arg
TCG
[SRA]
Identical group No.334916 (3 seq.)
>WENV170570528
FLOH01000009
[FLOH] marine metagenome; water
498638
498714
+
Arg
TCG
[ENA]
¢þ
>WENV170606171
FUWD010627219
[FUWD] metagenome; unknown
326
250
-
Arg
TCG
[ENA]
¢þ
>SRA1039416
SRR035090.487431
454 Sequencing (SRP001811)
45
121
+
Arg
TCG
[SRA]
Identical group No.357708 (6 seq.)
>WENV170603351
FUWD010304657
[FUWD] metagenome; unknown
724
648
-
Arg
TCG
[ENA]
¢þ
>SRA1032945
SRR035088.137027
454 Sequencing (SRP001809)
283
207
-
Arg
TCG
[SRA]
>SRA1037149
SRR035090.82107
454 Sequencing (SRP001811)
300
376
+
Arg
TCG
[SRA]
>SRA1037761
SRR035090.189907
454 Sequencing (SRP001811)
300
376
+
Arg
TCG
[SRA]
>SRA1038692
SRR035090.350491
454 Sequencing (SRP001811)
15
91
+
Arg
TCG
[SRA]
>C131010897
CP003985
Thermodesulfobacteriota
Desulfocapsa sulfexigens DSM 10523 [CP003985]
2669081
2669005
-
Arg
TCG
[Ensembl]
¡û
Identical group No.358333 (2 seq.)
>WENV170612361
FUWD012588225
[FUWD] metagenome; unknown
361
285
-
Arg
TCG
[ENA]
¢þ
>SRA1037566
SRR035090.155638
454 Sequencing (SRP001811)
364
288
-
Arg
TCG
[SRA]
Identical group No.358494 (4 seq.)
>WENV170613505
FUWD012809484
[FUWD] metagenome; unknown
476
552
+
Arg
TCG
[ENA]
¢þ
>SRA1037257
SRR035090.103855
454 Sequencing (SRP001811)
365
289
-
Arg
TCG
[SRA]
>SRA1037265
SRR035090.105185
454 Sequencing (SRP001811)
360
284
-
Arg
TCG
[SRA]
>SRA1037305
SRR035090.110663
454 Sequencing (SRP001811)
365
289
-
Arg
TCG
[SRA]
Identical group No.415429 (1 seq.)
>SRA1036960
SRR035090.46632
454 Sequencing (SRP001811)
83
7
-
Arg
TCG
[SRA]
Identical group No.415468 (1 seq.)
>SRA1038698
SRR035090.351614
454 Sequencing (SRP001811)
174
97
-
Arg
TCG
[SRA]
Identical group No.415485 (1 seq.)
>SRA1039336
SRR035090.470771
454 Sequencing (SRP001811)
196
272
+
Arg
TCG
[SRA]
Identical group No.548956 (5 seq.)
>WENV170626732
FUWD013229155
[FUWD] metagenome; unknown
2931
3006
+
Arg
TCG
[ENA]
¢þ
>WENV170629997
FUWD013289331
[FUWD] metagenome; unknown
8235
8310
+
Arg
TCG
[ENA]
¢þ
>SRA1016869
SRR035082.44910
454 Sequencing (SRP001803)
203
128
-
Arg
TCG
[SRA]
>SRA1018016
SRR035082.227440
454 Sequencing (SRP001803)
181
256
+
Arg
TCG
[SRA]
>SRA1038245
SRR035090.271164
454 Sequencing (SRP001811)
76
151
+
Arg
TCG
[SRA]
Identical group No.612498 (1 seq.)
>SRA1039669
SRR035090.540987
454 Sequencing (SRP001811)
16
91
+
Arg
TCG
[SRA]
Identical group No.751654 (1 seq.)
>SRA1037479
SRR035090.140112
454 Sequencing (SRP001811)
159
85
-
Arg
TCG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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