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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = AAG
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.89586 (2 seq.)
>SRA1040517
SRR035091.109088
454 Sequencing (SRP001812)
351
266
-
Leu
AAG
[SRA]
>SRA1040631
SRR035091.124533
454 Sequencing (SRP001812)
351
266
-
Leu
AAG
[SRA]
Identical group No.89593 (1 seq.)
>SRA1040836
SRR035091.158029
454 Sequencing (SRP001812)
191
106
-
Leu
AAG
[SRA]
Identical group No.89614 (1 seq.)
>SRA1042245
SRR035091.361327
454 Sequencing (SRP001812)
153
238
+
Leu
AAG
[SRA]
Identical group No.89617 (1 seq.)
>SRA1042404
SRR035091.383460
454 Sequencing (SRP001812)
38
123
+
Leu
AAG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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