This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = AAG
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.112616 (10 seq.)
>WENV170617862
FUWD012940153
[FUWD] metagenome; unknown
599
514
-
Leu
AAG
[ENA]
¢þ
>SRA1017298
SRR035082.114491
454 Sequencing (SRP001803)
119
34
-
Leu
AAG
[SRA]
>SRA1035743
SRR035089.366761
454 Sequencing (SRP001810)
242
157
-
Leu
AAG
[SRA]
>SRA1039971
SRR035091.4467
454 Sequencing (SRP001812)
194
279
+
Leu
AAG
[SRA]
>SRA1041705
SRR035091.280525
454 Sequencing (SRP001812)
20
105
+
Leu
AAG
[SRA]
>SRA1042073
SRR035091.334758
454 Sequencing (SRP001812)
62
147
+
Leu
AAG
[SRA]
>SRA1043895
SRR035092.191664
454 Sequencing (SRP001813)
89
174
+
Leu
AAG
[SRA]
>SRA1045079
SRR035092.406716
454 Sequencing (SRP001813)
99
184
+
Leu
AAG
[SRA]
>SRA1048847
SRR035094.262502
454 Sequencing (SRP001815)
237
152
-
Leu
AAG
[SRA]
>SRA1050537
SRR035095.286014
454 Sequencing (SRP001816)
103
18
-
Leu
AAG
[SRA]
Identical group No.136938 (2 seq.)
>SRA1040517
SRR035091.109088
454 Sequencing (SRP001812)
351
266
-
Leu
AAG
[SRA]
>SRA1040631
SRR035091.124533
454 Sequencing (SRP001812)
351
266
-
Leu
AAG
[SRA]
Identical group No.136947 (1 seq.)
>SRA1040836
SRR035091.158029
454 Sequencing (SRP001812)
191
106
-
Leu
AAG
[SRA]
Identical group No.136974 (1 seq.)
>SRA1042245
SRR035091.361327
454 Sequencing (SRP001812)
153
238
+
Leu
AAG
[SRA]
Identical group No.136979 (1 seq.)
>SRA1042404
SRR035091.383460
454 Sequencing (SRP001812)
38
123
+
Leu
AAG
[SRA]
Identical group No.165745 (3 seq.)
>WENV170612528
FUWD012628968
[FUWD] metagenome; unknown
176
94
-
Leu
AAG
[ENA]
¢þ
>SRA1034034
SRR035088.459458
454 Sequencing (SRP001809)
79
161
+
Leu
AAG
[SRA]
>SRA1042201
SRR035091.352903
454 Sequencing (SRP001812)
176
94
-
Leu
AAG
[SRA]
Identical group No.169188 (1 seq.)
>SRA1041289
SRR035091.224038
454 Sequencing (SRP001812)
405
323
-
Leu
AAG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK