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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = ACG
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.167908 (1 seq.)
>SRA1040315
SRR035091.77529
454 Sequencing (SRP001812)
340
417
+
Arg
ACG
[SRA]
Identical group No.243021 (1 seq.)
>SRA1040420
SRR035091.95259
454 Sequencing (SRP001812)
184
259
+
Arg
ACG
[SRA]
Identical group No.243042 (1 seq.)
>SRA1040697
SRR035091.134350
454 Sequencing (SRP001812)
295
219
-
Arg
ACG
[SRA]
Identical group No.243114 (2 seq.)
>SRA1041958
SRR035091.318871
454 Sequencing (SRP001812)
349
274
-
Arg
ACG
[SRA]
>SRA1042348
SRR035091.375447
454 Sequencing (SRP001812)
350
275
-
Arg
ACG
[SRA]
Identical group No.243126 (1 seq.)
>SRA1042105
SRR035091.339121
454 Sequencing (SRP001812)
225
151
-
Arg
ACG
[SRA]
Identical group No.243142 (1 seq.)
>SRA1042492
SRR035091.396860
454 Sequencing (SRP001812)
16
91
+
Arg
ACG
[SRA]
Identical group No.355537 (1 seq.)
>SRA1041127
SRR035091.201203
454 Sequencing (SRP001812)
107
35
-
Arg
ACG
[SRA]
Identical group No.448141 (1 seq.)
>SRA1041712
SRR035091.281413
454 Sequencing (SRP001812)
361
287
-
Arg
ACG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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