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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = CAA
HIT:
15 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.66478 (1 seq.)
>SRA1040208
SRR035091.58623
454 Sequencing (SRP001812)
224
140
-
Leu
CAA
[SRA]
Identical group No.66494 (1 seq.)
>SRA1041610
SRR035091.269683
454 Sequencing (SRP001812)
303
217
-
Leu
CAA
[SRA]
Identical group No.66497 (1 seq.)
>SRA1042340
SRR035091.374643
454 Sequencing (SRP001812)
282
370
+
Leu
CAA
[SRA]
Identical group No.89571 (1 seq.)
>SRA1039995
SRR035091.12926
454 Sequencing (SRP001812)
51
136
+
Leu
CAA
[SRA]
Identical group No.89582 (1 seq.)
>SRA1040405
SRR035091.92261
454 Sequencing (SRP001812)
38
123
+
Leu
CAA
[SRA]
Identical group No.89587 (1 seq.)
>SRA1040550
SRR035091.113527
454 Sequencing (SRP001812)
9
93
+
Leu
CAA
[SRA]
Identical group No.89589 (1 seq.)
>SRA1040721
SRR035091.136515
454 Sequencing (SRP001812)
337
251
-
Leu
CAA
[SRA]
Identical group No.89591 (1 seq.)
>SRA1040778
SRR035091.148923
454 Sequencing (SRP001812)
344
259
-
Leu
CAA
[SRA]
Identical group No.89596 (1 seq.)
>SRA1041146
SRR035091.204670
454 Sequencing (SRP001812)
386
472
+
Leu
CAA
[SRA]
Identical group No.89608 (1 seq.)
>SRA1041971
SRR035091.321213
454 Sequencing (SRP001812)
14
100
+
Leu
CAA
[SRA]
Identical group No.89609 (1 seq.)
>SRA1041980
SRR035091.322086
454 Sequencing (SRP001812)
114
198
+
Leu
CAA
[SRA]
Identical group No.89618 (1 seq.)
>SRA1042524
SRR035091.401999
454 Sequencing (SRP001812)
166
81
-
Leu
CAA
[SRA]
Identical group No.110780 (2 seq.)
>SRA1041859
SRR035091.306152
454 Sequencing (SRP001812)
124
40
-
Leu
CAA
[SRA]
>SRA1042614
SRR035091.416880
454 Sequencing (SRP001812)
124
40
-
Leu
CAA
[SRA]
Identical group No.132288 (1 seq.)
>SRA1040482
SRR035091.103680
454 Sequencing (SRP001812)
374
458
+
Leu
CAA
[SRA]
Identical group No.243011 (1 seq.)
>SRA1040308
SRR035091.75784
454 Sequencing (SRP001812)
171
98
-
Leu
CAA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK