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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = CAC
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.167909 (1 seq.)
>SRA1040348
SRR035091.82713
454 Sequencing (SRP001812)
119
42
-
Val
CAC
[SRA]
Identical group No.167965 (1 seq.)
>SRA1042728
SRR035091.436751
454 Sequencing (SRP001812)
17
94
+
Val
CAC
[SRA]
Identical group No.243015 (1 seq.)
>SRA1040321
SRR035091.78742
454 Sequencing (SRP001812)
316
240
-
Val
CAC
[SRA]
Identical group No.243051 (1 seq.)
>SRA1040796
SRR035091.151121
454 Sequencing (SRP001812)
449
376
-
Val
CAC
[SRA]
Identical group No.243057 (1 seq.)
>SRA1040933
SRR035091.170584
454 Sequencing (SRP001812)
123
47
-
Val
CAC
[SRA]
Identical group No.243092 (1 seq.)
>SRA1041535
SRR035091.257229
454 Sequencing (SRP001812)
234
160
-
Val
CAC
[SRA]
Identical group No.355449 (1 seq.)
>SRA1041837
SRR035091.303249
454 Sequencing (SRP001812)
266
191
-
Val
CAC
[SRA]
Identical group No.355468 (1 seq.)
>SRA1042187
SRR035091.351648
454 Sequencing (SRP001812)
257
182
-
Val
CAC
[SRA]
Identical group No.448067 (1 seq.)
>SRA1040552
SRR035091.114168
454 Sequencing (SRP001812)
548
476
-
Val
CAC
[SRA]
Identical group No.448112 (1 seq.)
>SRA1041216
SRR035091.214871
454 Sequencing (SRP001812)
281
207
-
Val
CAC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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