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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = CAG
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.66486 (1 seq.)
>SRA1041144
SRR035091.204559
454 Sequencing (SRP001812)
122
38
-
Leu
CAG
[SRA]
Identical group No.89572 (1 seq.)
>SRA1040061
SRR035091.29877
454 Sequencing (SRP001812)
122
39
-
Leu
CAG
[SRA]
Identical group No.89602 (1 seq.)
>SRA1041652
SRR035091.274202
454 Sequencing (SRP001812)
173
259
+
Leu
CAG
[SRA]
Identical group No.89613 (1 seq.)
>SRA1042229
SRR035091.359029
454 Sequencing (SRP001812)
395
478
+
Leu
CAG
[SRA]
Identical group No.110764 (1 seq.)
>SRA1040076
SRR035091.33470
454 Sequencing (SRP001812)
138
223
+
Leu
CAG
[SRA]
Identical group No.110790 (1 seq.)
>SRA1042855
SRR035091.456220
454 Sequencing (SRP001812)
216
300
+
Leu
CAG
[SRA]
Identical group No.132285 (1 seq.)
>SRA1040355
SRR035091.84505
454 Sequencing (SRP001812)
200
284
+
Leu
CAG
[SRA]
Identical group No.132289 (1 seq.)
>SRA1040557
SRR035091.114835
454 Sequencing (SRP001812)
104
22
-
Leu
CAG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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