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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = CAT
HIT:
50 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.154173 (1 seq.)
>SRA1041309
SRR035091.226223
454 Sequencing (SRP001812)
237
314
+
Met
CAT
[SRA]
Identical group No.154177 (1 seq.)
>SRA1041740
SRR035091.285381
454 Sequencing (SRP001812)
56
132
+
Met
CAT
[SRA]
Identical group No.154179 (1 seq.)
>SRA1042204
SRR035091.353180
454 Sequencing (SRP001812)
308
233
-
Met
CAT
[SRA]
Identical group No.167911 (1 seq.)
>SRA1040415
SRR035091.94872
454 Sequencing (SRP001812)
314
238
-
Met
CAT
[SRA]
Identical group No.167930 (1 seq.)
>SRA1041137
SRR035091.202731
454 Sequencing (SRP001812)
187
110
-
Met
CAT
[SRA]
Identical group No.167952 (1 seq.)
>SRA1042219
SRR035091.357437
454 Sequencing (SRP001812)
210
286
+
Met
CAT
[SRA]
Identical group No.167953 (1 seq.)
>SRA1042397
SRR035091.381829
454 Sequencing (SRP001812)
272
348
+
Met
CAT
[SRA]
Identical group No.167954 (1 seq.)
>SRA1042403
SRR035091.383409
454 Sequencing (SRP001812)
257
333
+
Met
CAT
[SRA]
Identical group No.242993 (1 seq.)
>SRA1039988
SRR035091.10520
454 Sequencing (SRP001812)
286
362
+
Met
CAT
[SRA]
Identical group No.243005 (2 seq.)
>SRA1040213
SRR035091.60008
454 Sequencing (SRP001812)
79
3
-
Met
CAT
[SRA]
>SRA1040653
SRR035091.127666
454 Sequencing (SRP001812)
79
3
-
Met
CAT
[SRA]
Identical group No.243008 (1 seq.)
>SRA1040251
SRR035091.66053
454 Sequencing (SRP001812)
121
45
-
Met
CAT
[SRA]
Identical group No.243018 (1 seq.)
>SRA1040334
SRR035091.80662
454 Sequencing (SRP001812)
17
90
+
Met
CAT
[SRA]
Identical group No.243030 (2 seq.)
>SRA1040551
SRR035091.113946
454 Sequencing (SRP001812)
365
291
-
Met
CAT
[SRA]
>SRA1042662
SRR035091.425912
454 Sequencing (SRP001812)
365
291
-
Met
CAT
[SRA]
Identical group No.243031 (2 seq.)
>SRA1040570
SRR035091.116755
454 Sequencing (SRP001812)
284
360
+
Met
CAT
[SRA]
>SRA1040633
SRR035091.124591
454 Sequencing (SRP001812)
285
361
+
Met
CAT
[SRA]
Identical group No.243045 (1 seq.)
>SRA1040723
SRR035091.136670
454 Sequencing (SRP001812)
128
53
-
Met
CAT
[SRA]
Identical group No.243050 (1 seq.)
>SRA1040788
SRR035091.150227
454 Sequencing (SRP001812)
179
105
-
Met
CAT
[SRA]
Identical group No.243061 (1 seq.)
>SRA1040980
SRR035091.177198
454 Sequencing (SRP001812)
165
238
+
Met
CAT
[SRA]
Identical group No.243072 (1 seq.)
>SRA1041236
SRR035091.217866
454 Sequencing (SRP001812)
132
206
+
Met
CAT
[SRA]
Identical group No.243081 (1 seq.)
>SRA1041408
SRR035091.237924
454 Sequencing (SRP001812)
95
171
+
Met
CAT
[SRA]
Identical group No.243096 (1 seq.)
>SRA1041612
SRR035091.269923
454 Sequencing (SRP001812)
262
186
-
Met
CAT
[SRA]
Identical group No.243097 (1 seq.)
>SRA1041653
SRR035091.274321
454 Sequencing (SRP001812)
263
339
+
Met
CAT
[SRA]
Identical group No.243098 (1 seq.)
>SRA1041671
SRR035091.277183
454 Sequencing (SRP001812)
372
296
-
Met
CAT
[SRA]
Identical group No.243102 (1 seq.)
>SRA1041697
SRR035091.280193
454 Sequencing (SRP001812)
167
92
-
Met
CAT
[SRA]
Identical group No.243108 (1 seq.)
>SRA1041803
SRR035091.297077
454 Sequencing (SRP001812)
146
70
-
Met
CAT
[SRA]
Identical group No.243144 (1 seq.)
>SRA1042496
SRR035091.397470
454 Sequencing (SRP001812)
116
40
-
Met
CAT
[SRA]
Identical group No.243154 (1 seq.)
>SRA1042736
SRR035091.437928
454 Sequencing (SRP001812)
111
187
+
Met
CAT
[SRA]
Identical group No.243173 (1 seq.)
>SRA1040813
SRR035091.153279
454 Sequencing (SRP001812)
117
190
+
Met
CAT
[SRA]
Identical group No.355342 (1 seq.)
>SRA1040274
SRR035091.70819
454 Sequencing (SRP001812)
77
152
+
Met
CAT
[SRA]
Identical group No.355366 (1 seq.)
>SRA1040619
SRR035091.122977
454 Sequencing (SRP001812)
495
422
-
Met
CAT
[SRA]
Identical group No.355407 (1 seq.)
>SRA1041095
SRR035091.195120
454 Sequencing (SRP001812)
493
420
-
Met
CAT
[SRA]
Identical group No.355412 (1 seq.)
>SRA1041171
SRR035091.208508
454 Sequencing (SRP001812)
128
53
-
Met
CAT
[SRA]
Identical group No.355443 (1 seq.)
>SRA1041729
SRR035091.283626
454 Sequencing (SRP001812)
436
361
-
Met
CAT
[SRA]
Identical group No.355448 (1 seq.)
>SRA1041834
SRR035091.303070
454 Sequencing (SRP001812)
143
218
+
Met
CAT
[SRA]
Identical group No.355535 (2 seq.)
>SRA1040081
SRR035091.34531
454 Sequencing (SRP001812)
222
150
-
Met
CAT
[SRA]
>SRA1040262
SRR035091.68216
454 Sequencing (SRP001812)
223
151
-
Met
CAT
[SRA]
Identical group No.355540 (1 seq.)
>SRA1041281
SRR035091.223415
454 Sequencing (SRP001812)
232
160
-
Met
CAT
[SRA]
Identical group No.448050 (1 seq.)
>SRA1040472
SRR035091.102594
454 Sequencing (SRP001812)
284
213
-
Met
CAT
[SRA]
Identical group No.448079 (1 seq.)
>SRA1040710
SRR035091.135674
454 Sequencing (SRP001812)
393
319
-
Met
CAT
[SRA]
Identical group No.448084 (1 seq.)
>SRA1040787
SRR035091.150227
454 Sequencing (SRP001812)
415
341
-
Met
CAT
[SRA]
Identical group No.448117 (1 seq.)
>SRA1041282
SRR035091.223431
454 Sequencing (SRP001812)
229
155
-
Met
CAT
[SRA]
Identical group No.448183 (1 seq.)
>SRA1042411
SRR035091.383878
454 Sequencing (SRP001812)
158
87
-
Met
CAT
[SRA]
Identical group No.448200 (1 seq.)
>SRA1042639
SRR035091.421102
454 Sequencing (SRP001812)
170
241
+
Met
CAT
[SRA]
Identical group No.448229 (1 seq.)
>SRA1040555
SRR035091.114543
454 Sequencing (SRP001812)
404
333
-
Met
CAT
[SRA]
Identical group No.502967 (1 seq.)
>SRA1040053
SRR035091.28073
454 Sequencing (SRP001812)
241
169
-
Met
CAT
[SRA]
Identical group No.502974 (1 seq.)
>SRA1040132
SRR035091.45002
454 Sequencing (SRP001812)
292
221
-
Met
CAT
[SRA]
Identical group No.502990 (1 seq.)
>SRA1040646
SRR035091.126934
454 Sequencing (SRP001812)
196
124
-
Met
CAT
[SRA]
Identical group No.503040 (1 seq.)
>SRA1041857
SRR035091.305488
454 Sequencing (SRP001812)
160
232
+
Met
CAT
[SRA]
Identical group No.503052 (1 seq.)
>SRA1042261
SRR035091.364105
454 Sequencing (SRP001812)
147
220
+
Met
CAT
[SRA]
Identical group No.503072 (1 seq.)
>SRA1042724
SRR035091.435955
454 Sequencing (SRP001812)
199
269
+
Met
CAT
[SRA]
Identical group No.503096 (1 seq.)
>SRA1041436
SRR035091.242062
454 Sequencing (SRP001812)
6
78
+
Met
CAT
[SRA]
Identical group No.503099 (1 seq.)
>SRA1042834
SRR035091.452903
454 Sequencing (SRP001812)
81
9
-
Met
CAT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK