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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = CCA
HIT:
29 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.167925 (1 seq.)
>SRA1040949
SRR035091.172731
454 Sequencing (SRP001812)
594
515
-
Trp
CCA
[SRA]
Identical group No.243016 (1 seq.)
>SRA1040326
SRR035091.78844
454 Sequencing (SRP001812)
167
94
-
Trp
CCA
[SRA]
Identical group No.243020 (2 seq.)
>SRA1040366
SRR035091.85226
454 Sequencing (SRP001812)
254
178
-
Trp
CCA
[SRA]
>SRA1041556
SRR035091.260185
454 Sequencing (SRP001812)
254
178
-
Trp
CCA
[SRA]
Identical group No.243091 (1 seq.)
>SRA1041529
SRR035091.256303
454 Sequencing (SRP001812)
385
309
-
Trp
CCA
[SRA]
Identical group No.243119 (1 seq.)
>SRA1041991
SRR035091.323925
454 Sequencing (SRP001812)
239
165
-
Trp
CCA
[SRA]
Identical group No.243128 (1 seq.)
>SRA1042125
SRR035091.342659
454 Sequencing (SRP001812)
449
525
+
Trp
CCA
[SRA]
Identical group No.355368 (2 seq.)
>SRA1040641
SRR035091.126403
454 Sequencing (SRP001812)
216
142
-
Trp
CCA
[SRA]
>SRA1040807
SRR035091.153119
454 Sequencing (SRP001812)
216
142
-
Trp
CCA
[SRA]
Identical group No.355478 (1 seq.)
>SRA1042288
SRR035091.367748
454 Sequencing (SRP001812)
157
85
-
Trp
CCA
[SRA]
Identical group No.355545 (1 seq.)
>SRA1042945
SRR035091.471627
454 Sequencing (SRP001812)
262
189
-
Trp
CCA
[SRA]
Identical group No.448019 (1 seq.)
>SRA1040014
SRR035091.18045
454 Sequencing (SRP001812)
453
380
-
Trp
CCA
[SRA]
Identical group No.448101 (1 seq.)
>SRA1041022
SRR035091.183488
454 Sequencing (SRP001812)
322
396
+
Trp
CCA
[SRA]
Identical group No.448114 (1 seq.)
>SRA1041274
SRR035091.222099
454 Sequencing (SRP001812)
26
97
+
Trp
CCA
[SRA]
Identical group No.448137 (1 seq.)
>SRA1041678
SRR035091.277573
454 Sequencing (SRP001812)
221
149
-
Trp
CCA
[SRA]
Identical group No.448145 (1 seq.)
>SRA1041764
SRR035091.289992
454 Sequencing (SRP001812)
366
292
-
Trp
CCA
[SRA]
Identical group No.502972 (1 seq.)
>SRA1040091
SRR035091.37331
454 Sequencing (SRP001812)
242
171
-
Trp
CCA
[SRA]
Identical group No.502973 (1 seq.)
>SRA1040104
SRR035091.39328
454 Sequencing (SRP001812)
10
82
+
Trp
CCA
[SRA]
Identical group No.502977 (1 seq.)
>SRA1040254
SRR035091.66477
454 Sequencing (SRP001812)
51
123
+
Trp
CCA
[SRA]
Identical group No.502982 (1 seq.)
>SRA1040458
SRR035091.100792
454 Sequencing (SRP001812)
40
113
+
Trp
CCA
[SRA]
Identical group No.502984 (1 seq.)
>SRA1040469
SRR035091.102324
454 Sequencing (SRP001812)
90
163
+
Trp
CCA
[SRA]
Identical group No.502985 (1 seq.)
>SRA1040488
SRR035091.104869
454 Sequencing (SRP001812)
281
354
+
Trp
CCA
[SRA]
Identical group No.503007 (2 seq.)
>SRA1041074
SRR035091.192311
454 Sequencing (SRP001812)
55
128
+
Trp
CCA
[SRA]
>SRA1041950
SRR035091.317797
454 Sequencing (SRP001812)
55
128
+
Trp
CCA
[SRA]
Identical group No.503009 (1 seq.)
>SRA1041102
SRR035091.196908
454 Sequencing (SRP001812)
289
218
-
Trp
CCA
[SRA]
Identical group No.503023 (1 seq.)
>SRA1041419
SRR035091.239630
454 Sequencing (SRP001812)
169
240
+
Trp
CCA
[SRA]
Identical group No.503029 (1 seq.)
>SRA1041618
SRR035091.270226
454 Sequencing (SRP001812)
24
97
+
Trp
CCA
[SRA]
Identical group No.503044 (1 seq.)
>SRA1042040
SRR035091.331541
454 Sequencing (SRP001812)
100
171
+
Trp
CCA
[SRA]
Identical group No.503046 (1 seq.)
>SRA1042127
SRR035091.342857
454 Sequencing (SRP001812)
115
42
-
Trp
CCA
[SRA]
Identical group No.503050 (1 seq.)
>SRA1042221
SRR035091.358160
454 Sequencing (SRP001812)
73
143
+
Trp
CCA
[SRA]
Identical group No.503074 (1 seq.)
>SRA1042815
SRR035091.450375
454 Sequencing (SRP001812)
135
209
+
Trp
CCA
[SRA]
Identical group No.503077 (1 seq.)
>SRA1042897
SRR035091.462964
454 Sequencing (SRP001812)
288
359
+
Trp
CCA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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