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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = CCC
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.355507 (1 seq.)
>SRA1042648
SRR035091.423491
454 Sequencing (SRP001812)
10
84
+
Gly
CCC
[SRA]
Identical group No.448022 (2 seq.)
>SRA1040073
SRR035091.31806
454 Sequencing (SRP001812)
174
102
-
Gly
CCC
[SRA]
>SRA1040136
SRR035091.45702
454 Sequencing (SRP001812)
174
102
-
Gly
CCC
[SRA]
Identical group No.448033 (1 seq.)
>SRA1040197
SRR035091.56774
454 Sequencing (SRP001812)
107
33
-
Gly
CCC
[SRA]
Identical group No.502976 (2 seq.)
>SRA1040229
SRR035091.63214
454 Sequencing (SRP001812)
38
108
+
Gly
CCC
[SRA]
>SRA1042940
SRR035091.470780
454 Sequencing (SRP001812)
223
293
+
Gly
CCC
[SRA]
Identical group No.502994 (1 seq.)
>SRA1040695
SRR035091.134258
454 Sequencing (SRP001812)
109
36
-
Gly
CCC
[SRA]
Identical group No.503033 (1 seq.)
>SRA1041718
SRR035091.282364
454 Sequencing (SRP001812)
77
147
+
Gly
CCC
[SRA]
Identical group No.503039 (1 seq.)
>SRA1041855
SRR035091.305437
454 Sequencing (SRP001812)
424
497
+
Gly
CCC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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