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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = CCT
HIT:
31 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.154181 (1 seq.)
>SRA1042526
SRR035091.402500
454 Sequencing (SRP001812)
29
104
+
Arg
CCT
[SRA]
Identical group No.167906 (1 seq.)
>SRA1040297
SRR035091.73777
454 Sequencing (SRP001812)
414
490
+
Arg
CCT
[SRA]
Identical group No.167920 (1 seq.)
>SRA1040739
SRR035091.140815
454 Sequencing (SRP001812)
116
40
-
Arg
CCT
[SRA]
Identical group No.167924 (3 seq.)
>SRA1040934
SRR035091.170796
454 Sequencing (SRP001812)
318
241
-
Arg
CCT
[SRA]
>SRA1041410
SRR035091.238295
454 Sequencing (SRP001812)
319
242
-
Arg
CCT
[SRA]
>SRA1042802
SRR035091.449303
454 Sequencing (SRP001812)
318
241
-
Arg
CCT
[SRA]
Identical group No.167955 (1 seq.)
>SRA1042405
SRR035091.383460
454 Sequencing (SRP001812)
125
201
+
Arg
CCT
[SRA]
Identical group No.243027 (2 seq.)
>SRA1040518
SRR035091.109088
454 Sequencing (SRP001812)
262
187
-
Arg
CCT
[SRA]
>SRA1040632
SRR035091.124533
454 Sequencing (SRP001812)
262
187
-
Arg
CCT
[SRA]
Identical group No.243034 (1 seq.)
>SRA1040615
SRR035091.122723
454 Sequencing (SRP001812)
254
330
+
Arg
CCT
[SRA]
Identical group No.243068 (1 seq.)
>SRA1041163
SRR035091.207385
454 Sequencing (SRP001812)
329
404
+
Arg
CCT
[SRA]
Identical group No.243095 (1 seq.)
>SRA1041593
SRR035091.267154
454 Sequencing (SRP001812)
301
375
+
Arg
CCT
[SRA]
Identical group No.243159 (1 seq.)
>SRA1042776
SRR035091.444886
454 Sequencing (SRP001812)
325
252
-
Arg
CCT
[SRA]
Identical group No.243164 (1 seq.)
>SRA1042883
SRR035091.461176
454 Sequencing (SRP001812)
303
227
-
Arg
CCT
[SRA]
Identical group No.355345 (1 seq.)
>SRA1040301
SRR035091.74635
454 Sequencing (SRP001812)
119
44
-
Arg
CCT
[SRA]
Identical group No.355352 (1 seq.)
>SRA1040429
SRR035091.96170
454 Sequencing (SRP001812)
115
40
-
Arg
CCT
[SRA]
Identical group No.355390 (1 seq.)
>SRA1040864
SRR035091.160713
454 Sequencing (SRP001812)
481
553
+
Arg
CCT
[SRA]
Identical group No.355403 (1 seq.)
>SRA1041038
SRR035091.185975
454 Sequencing (SRP001812)
328
255
-
Arg
CCT
[SRA]
Identical group No.355454 (1 seq.)
>SRA1041931
SRR035091.316293
454 Sequencing (SRP001812)
318
244
-
Arg
CCT
[SRA]
Identical group No.355523 (1 seq.)
>SRA1042863
SRR035091.457465
454 Sequencing (SRP001812)
246
319
+
Arg
CCT
[SRA]
Identical group No.448026 (1 seq.)
>SRA1040133
SRR035091.45103
454 Sequencing (SRP001812)
114
186
+
Arg
CCT
[SRA]
Identical group No.448031 (1 seq.)
>SRA1040180
SRR035091.53403
454 Sequencing (SRP001812)
374
446
+
Arg
CCT
[SRA]
Identical group No.448058 (1 seq.)
>SRA1040506
SRR035091.107086
454 Sequencing (SRP001812)
98
27
-
Arg
CCT
[SRA]
Identical group No.448075 (1 seq.)
>SRA1040676
SRR035091.131216
454 Sequencing (SRP001812)
6
80
+
Arg
CCT
[SRA]
Identical group No.448097 (1 seq.)
>SRA1040992
SRR035091.178824
454 Sequencing (SRP001812)
489
417
-
Arg
CCT
[SRA]
Identical group No.448104 (1 seq.)
>SRA1041039
SRR035091.186133
454 Sequencing (SRP001812)
152
226
+
Arg
CCT
[SRA]
Identical group No.448107 (1 seq.)
>SRA1041089
SRR035091.194647
454 Sequencing (SRP001812)
98
172
+
Arg
CCT
[SRA]
Identical group No.448118 (1 seq.)
>SRA1041297
SRR035091.224876
454 Sequencing (SRP001812)
26
100
+
Arg
CCT
[SRA]
Identical group No.448129 (1 seq.)
>SRA1041522
SRR035091.255387
454 Sequencing (SRP001812)
397
324
-
Arg
CCT
[SRA]
Identical group No.448151 (1 seq.)
>SRA1041860
SRR035091.306276
454 Sequencing (SRP001812)
82
156
+
Arg
CCT
[SRA]
Identical group No.448188 (1 seq.)
>SRA1042474
SRR035091.393835
454 Sequencing (SRP001812)
293
365
+
Arg
CCT
[SRA]
Identical group No.448193 (1 seq.)
>SRA1042522
SRR035091.401630
454 Sequencing (SRP001812)
323
251
-
Arg
CCT
[SRA]
Identical group No.448217 (1 seq.)
>SRA1042832
SRR035091.452699
454 Sequencing (SRP001812)
270
344
+
Arg
CCT
[SRA]
Identical group No.448236 (1 seq.)
>SRA1042564
SRR035091.409503
454 Sequencing (SRP001812)
79
151
+
Arg
CCT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK