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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = CGA
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.39705 (1 seq.)
>SRA1040425
SRR035091.95836
454 Sequencing (SRP001812)
271
359
+
Ser
CGA
[SRA]
Identical group No.39708 (1 seq.)
>SRA1040874
SRR035091.162258
454 Sequencing (SRP001812)
166
77
-
Ser
CGA
[SRA]
Identical group No.39711 (1 seq.)
>SRA1041183
SRR035091.209782
454 Sequencing (SRP001812)
353
264
-
Ser
CGA
[SRA]
Identical group No.39714 (1 seq.)
>SRA1041339
SRR035091.229674
454 Sequencing (SRP001812)
116
205
+
Ser
CGA
[SRA]
Identical group No.52453 (1 seq.)
>SRA1040635
SRR035091.124720
454 Sequencing (SRP001812)
64
150
+
Ser
CGA
[SRA]
Identical group No.66498 (1 seq.)
>SRA1042342
SRR035091.374670
454 Sequencing (SRP001812)
354
269
-
Ser
CGA
[SRA]
Identical group No.89581 (1 seq.)
>SRA1040404
SRR035091.92075
454 Sequencing (SRP001812)
244
158
-
Ser
CGA
[SRA]
Identical group No.89610 (1 seq.)
>SRA1042077
SRR035091.335078
454 Sequencing (SRP001812)
276
362
+
Ser
CGA
[SRA]
Identical group No.89622 (1 seq.)
>SRA1041292
SRR035091.224203
454 Sequencing (SRP001812)
180
96
-
Ser
CGA
[SRA]
Identical group No.145019 (1 seq.)
>SRA1040850
SRR035091.159363
454 Sequencing (SRP001812)
288
207
-
Ser
CGA
[SRA]
Identical group No.145029 (1 seq.)
>SRA1042095
SRR035091.337422
454 Sequencing (SRP001812)
184
266
+
Ser
CGA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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