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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = CGC
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.151729 (1 seq.)
>SRA1041667
SRR035091.276731
454 Sequencing (SRP001812)
96
175
+
Ala
CGC
[SRA]
Identical group No.243013 (1 seq.)
>SRA1040318
SRR035091.77804
454 Sequencing (SRP001812)
397
470
+
Ala
CGC
[SRA]
Identical group No.355386 (1 seq.)
>SRA1040822
SRR035091.154148
454 Sequencing (SRP001812)
188
113
-
Ala
CGC
[SRA]
Identical group No.355420 (1 seq.)
>SRA1041262
SRR035091.220865
454 Sequencing (SRP001812)
349
424
+
Ala
CGC
[SRA]
Identical group No.355473 (1 seq.)
>SRA1042260
SRR035091.363893
454 Sequencing (SRP001812)
104
179
+
Ala
CGC
[SRA]
Identical group No.355482 (1 seq.)
>SRA1042344
SRR035091.374977
454 Sequencing (SRP001812)
232
307
+
Ala
CGC
[SRA]
Identical group No.355524 (1 seq.)
>SRA1042869
SRR035091.459072
454 Sequencing (SRP001812)
169
241
+
Ala
CGC
[SRA]
Identical group No.448153 (1 seq.)
>SRA1041877
SRR035091.309001
454 Sequencing (SRP001812)
358
432
+
Ala
CGC
[SRA]
Identical group No.502969 (2 seq.)
>SRA1040058
SRR035091.29440
454 Sequencing (SRP001812)
194
264
+
Ala
CGC
[SRA]
>SRA1041060
SRR035091.189681
454 Sequencing (SRP001812)
192
262
+
Ala
CGC
[SRA]
Identical group No.502988 (1 seq.)
>SRA1040595
SRR035091.120533
454 Sequencing (SRP001812)
132
205
+
Ala
CGC
[SRA]
Identical group No.503071 (1 seq.)
>SRA1042708
SRR035091.433679
454 Sequencing (SRP001812)
421
494
+
Ala
CGC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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