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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = CGG
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.167950 (1 seq.)
>SRA1042106
SRR035091.339288
454 Sequencing (SRP001812)
193
267
+
Pro
CGG
[SRA]
Identical group No.167963 (1 seq.)
>SRA1042586
SRR035091.412386
454 Sequencing (SRP001812)
351
274
-
Pro
CGG
[SRA]
Identical group No.243158 (1 seq.)
>SRA1042768
SRR035091.444165
454 Sequencing (SRP001812)
175
251
+
Pro
CGG
[SRA]
Identical group No.503092 (2 seq.)
>SRA1040490
SRR035091.105423
454 Sequencing (SRP001812)
230
301
+
Pro
CGG
[SRA]
>SRA1040684
SRR035091.132591
454 Sequencing (SRP001812)
234
305
+
Pro
CGG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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