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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = CGG
HIT:
20 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238071 (1 seq.)
>SRA1041404
SRR035091.237743
454 Sequencing (SRP001812)
60
138
+
Pro
CGG
[SRA]
Identical group No.238072 (1 seq.)
>SRA1041488
SRR035091.249259
454 Sequencing (SRP001812)
396
318
-
Pro
CGG
[SRA]
Identical group No.244443 (5 seq.)
>WENV170620944
FUWD013044115
[FUWD] metagenome; unknown
2457
2381
-
Pro
CGG
[ENA]
¢þ
>WENV170629101
FUWD013261062
[FUWD] metagenome; unknown
2457
2381
-
Pro
CGG
[ENA]
¢þ
>SRA1029202
SRR035087.91723
454 Sequencing (SRP001808)
365
289
-
Pro
CGG
[SRA]
>SRA1032422
SRR035087.628035
454 Sequencing (SRP001808)
38
114
+
Pro
CGG
[SRA]
>SRA1040411
SRR035091.94186
454 Sequencing (SRP001812)
83
159
+
Pro
CGG
[SRA]
Identical group No.254160 (3 seq.)
>WENV170612530
FUWD012629684
[FUWD] metagenome; unknown
112
189
+
Pro
CGG
[ENA]
¢þ
>SRA1042254
SRR035091.362884
454 Sequencing (SRP001812)
112
189
+
Pro
CGG
[SRA]
>SRA1042747
SRR035091.440041
454 Sequencing (SRP001812)
112
189
+
Pro
CGG
[SRA]
Identical group No.258050 (1 seq.)
>SRA1041510
SRR035091.252904
454 Sequencing (SRP001812)
336
410
+
Pro
CGG
[SRA]
Identical group No.258059 (1 seq.)
>SRA1042106
SRR035091.339288
454 Sequencing (SRP001812)
193
267
+
Pro
CGG
[SRA]
Identical group No.258073 (1 seq.)
>SRA1042586
SRR035091.412386
454 Sequencing (SRP001812)
351
274
-
Pro
CGG
[SRA]
Identical group No.272683 (4 seq.)
>WENV170612278
FUWD012562149
[FUWD] metagenome; unknown
149
223
+
Pro
CGG
[ENA]
¢þ
>SRA1033430
SRR035088.255080
454 Sequencing (SRP001809)
268
194
-
Pro
CGG
[SRA]
>SRA1035111
SRR035089.239504
454 Sequencing (SRP001810)
224
298
+
Pro
CGG
[SRA]
>SRA1041819
SRR035091.299530
454 Sequencing (SRP001812)
134
60
-
Pro
CGG
[SRA]
Identical group No.272726 (4 seq.)
>WENV170620518
FUWD013033102
[FUWD] metagenome; unknown
1062
986
-
Pro
CGG
[ENA]
¢þ
>WENV170628661
FUWD013250548
[FUWD] metagenome; unknown
3946
4022
+
Pro
CGG
[ENA]
¢þ
>SRA1035361
SRR035089.290474
454 Sequencing (SRP001810)
401
325
-
Pro
CGG
[SRA]
>SRA1041121
SRR035091.200281
454 Sequencing (SRP001812)
280
204
-
Pro
CGG
[SRA]
Identical group No.272887 (7 seq.)
>WENV170605094
FUWD010449019
[FUWD] metagenome; unknown
72
148
+
Pro
CGG
[ENA]
¢þ
>WENV170619285
FUWD013007945
[FUWD] metagenome; unknown
127
53
-
Pro
CGG
[ENA]
¢þ
>SRA1030494
SRR035087.287551
454 Sequencing (SRP001808)
354
430
+
Pro
CGG
[SRA]
>SRA1036360
SRR035089.501595
454 Sequencing (SRP001810)
46
122
+
Pro
CGG
[SRA]
>SRA1036635
SRR035089.568580
454 Sequencing (SRP001810)
46
122
+
Pro
CGG
[SRA]
>SRA1040102
SRR035091.38820
454 Sequencing (SRP001812)
147
73
-
Pro
CGG
[SRA]
>SRA1040581
SRR035091.118580
454 Sequencing (SRP001812)
144
68
-
Pro
CGG
[SRA]
Identical group No.334922 (3 seq.)
>WENV170570555
FLOH01000011
[FLOH] marine metagenome; water
464175
464249
+
Pro
CGG
[ENA]
¢þ
>WENV170572153
FLOH01000566
[FLOH] marine metagenome; water
19898
19824
-
Pro
CGG
[ENA]
¢þ
>SRA1042099
SRR035091.337546
454 Sequencing (SRP001812)
422
348
-
Pro
CGG
[SRA]
Identical group No.358364 (4 seq.)
>WENV170612549
FUWD012632821
[FUWD] metagenome; unknown
168
92
-
Pro
CGG
[ENA]
¢þ
>SRA1042604
SRR035091.414725
454 Sequencing (SRP001812)
168
92
-
Pro
CGG
[SRA]
>SRA1050036
SRR035095.179808
454 Sequencing (SRP001816)
68
144
+
Pro
CGG
[SRA]
>SRA1050705
SRR035095.332754
454 Sequencing (SRP001816)
68
144
+
Pro
CGG
[SRA]
Identical group No.381248 (1 seq.)
>SRA1041107
SRR035091.197541
454 Sequencing (SRP001812)
282
206
-
Pro
CGG
[SRA]
Identical group No.381366 (1 seq.)
>SRA1042768
SRR035091.444165
454 Sequencing (SRP001812)
175
251
+
Pro
CGG
[SRA]
Identical group No.548007 (5 seq.)
>WENV170608211
FUWD010902775
[FUWD] metagenome; unknown
493
568
+
Pro
CGG
[ENA]
¢þ
>SRA1041599
SRR035091.268204
454 Sequencing (SRP001812)
62
135
+
Pro
CGG
[SRA]
>SRA1048284
SRR035094.139102
454 Sequencing (SRP001815)
308
383
+
Pro
CGG
[SRA]
>SRA1049546
SRR035095.94504
454 Sequencing (SRP001816)
227
302
+
Pro
CGG
[SRA]
>SRA1049805
SRR035095.141230
454 Sequencing (SRP001816)
227
302
+
Pro
CGG
[SRA]
Identical group No.654581 (4 seq.)
>WENV170621482
FUWD013060870
[FUWD] metagenome; unknown
1753
1825
+
Pro
CGG
[ENA]
¢þ
>WENV170629663
FUWD013277094
[FUWD] metagenome; unknown
1753
1825
+
Pro
CGG
[ENA]
¢þ
>SRA1035928
SRR035089.405409
454 Sequencing (SRP001810)
178
250
+
Pro
CGG
[SRA]
>SRA1042534
SRR035091.404021
454 Sequencing (SRP001812)
90
162
+
Pro
CGG
[SRA]
Identical group No.672628 (5 seq.)
>WENV170600690
FUWD010138174
[FUWD] metagenome; unknown
145
71
-
Pro
CGG
[ENA]
¢þ
>WENV170626970
FUWD013230564
[FUWD] metagenome; unknown
779
705
-
Pro
CGG
[ENA]
¢þ
>SRA1019085
SRR035082.399022
454 Sequencing (SRP001803)
354
428
+
Pro
CGG
[SRA]
>SRA1032072
SRR035087.545819
454 Sequencing (SRP001808)
88
162
+
Pro
CGG
[SRA]
>SRA1041523
SRR035091.255387
454 Sequencing (SRP001812)
137
63
-
Pro
CGG
[SRA]
Identical group No.727163 (2 seq.)
>W131193265
ASNW01000012
Unclassified
Parcubacteria bacterium SCGC AB-164-E21 OD1 bacterium SCGC AB-164-E21 [ASNW]
8929
9002
+
Pro
CGG
[ENA]
¡û
>SRA1042714
SRR035091.434759
454 Sequencing (SRP001812)
39
111
+
Pro
CGG
[SRA]
Identical group No.788321 (5 seq.)
>WENV170621375
FUWD013057287
[FUWD] metagenome; unknown
1559
1488
-
Pro
CGG
[ENA]
¢þ
>WENV170629559
FUWD013273628
[FUWD] metagenome; unknown
1559
1488
-
Pro
CGG
[ENA]
¢þ
>SRA1028862
SRR035087.25176
454 Sequencing (SRP001808)
258
187
-
Pro
CGG
[SRA]
>SRA1041023
SRR035091.183649
454 Sequencing (SRP001812)
519
448
-
Pro
CGG
[SRA]
>SRA1042152
SRR035091.346301
454 Sequencing (SRP001812)
521
450
-
Pro
CGG
[SRA]
Identical group No.812824 (2 seq.)
>SRA1040490
SRR035091.105423
454 Sequencing (SRP001812)
230
301
+
Pro
CGG
[SRA]
>SRA1040684
SRR035091.132591
454 Sequencing (SRP001812)
234
305
+
Pro
CGG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK