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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = CTC
HIT:
20 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.167939 (1 seq.)
>SRA1041447
SRR035091.242987
454 Sequencing (SRP001812)
293
368
+
Glu
CTC
[SRA]
Identical group No.167960 (2 seq.)
>SRA1042484
SRR035091.395699
454 Sequencing (SRP001812)
158
81
-
Glu
CTC
[SRA]
>SRA1042889
SRR035091.461760
454 Sequencing (SRP001812)
158
81
-
Glu
CTC
[SRA]
Identical group No.243090 (1 seq.)
>SRA1041516
SRR035091.254607
454 Sequencing (SRP001812)
320
244
-
Glu
CTC
[SRA]
Identical group No.355322 (1 seq.)
>SRA1040064
SRR035091.29890
454 Sequencing (SRP001812)
417
342
-
Glu
CTC
[SRA]
Identical group No.355375 (1 seq.)
>SRA1040699
SRR035091.134696
454 Sequencing (SRP001812)
174
99
-
Glu
CTC
[SRA]
Identical group No.355416 (1 seq.)
>SRA1041235
SRR035091.217853
454 Sequencing (SRP001812)
414
486
+
Glu
CTC
[SRA]
Identical group No.355433 (1 seq.)
>SRA1041517
SRR035091.254956
454 Sequencing (SRP001812)
113
38
-
Glu
CTC
[SRA]
Identical group No.355503 (1 seq.)
>SRA1042616
SRR035091.417053
454 Sequencing (SRP001812)
158
234
+
Glu
CTC
[SRA]
Identical group No.355506 (1 seq.)
>SRA1042636
SRR035091.420092
454 Sequencing (SRP001812)
290
365
+
Glu
CTC
[SRA]
Identical group No.448014 (1 seq.)
>SRA1039989
SRR035091.10873
454 Sequencing (SRP001812)
28
102
+
Glu
CTC
[SRA]
Identical group No.448035 (1 seq.)
>SRA1040233
SRR035091.64113
454 Sequencing (SRP001812)
219
145
-
Glu
CTC
[SRA]
Identical group No.448080 (1 seq.)
>SRA1040728
SRR035091.138501
454 Sequencing (SRP001812)
115
41
-
Glu
CTC
[SRA]
Identical group No.448089 (1 seq.)
>SRA1040831
SRR035091.157387
454 Sequencing (SRP001812)
311
237
-
Glu
CTC
[SRA]
Identical group No.448119 (1 seq.)
>SRA1041312
SRR035091.226854
454 Sequencing (SRP001812)
191
262
+
Glu
CTC
[SRA]
Identical group No.448136 (1 seq.)
>SRA1041646
SRR035091.273452
454 Sequencing (SRP001812)
155
81
-
Glu
CTC
[SRA]
Identical group No.448143 (1 seq.)
>SRA1041748
SRR035091.287391
454 Sequencing (SRP001812)
603
529
-
Glu
CTC
[SRA]
Identical group No.448172 (1 seq.)
>SRA1042173
SRR035091.350085
454 Sequencing (SRP001812)
286
360
+
Glu
CTC
[SRA]
Identical group No.448194 (1 seq.)
>SRA1042539
SRR035091.404614
454 Sequencing (SRP001812)
197
122
-
Glu
CTC
[SRA]
Identical group No.448210 (1 seq.)
>SRA1042789
SRR035091.448111
454 Sequencing (SRP001812)
285
359
+
Glu
CTC
[SRA]
Identical group No.448211 (1 seq.)
>SRA1042790
SRR035091.448168
454 Sequencing (SRP001812)
79
5
-
Glu
CTC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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