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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = CTG
HIT:
32 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.243094 (1 seq.)
>SRA1041580
SRR035091.264587
454 Sequencing (SRP001812)
122
47
-
Gln
CTG
[SRA]
Identical group No.355344 (1 seq.)
>SRA1040289
SRR035091.72710
454 Sequencing (SRP001812)
157
83
-
Gln
CTG
[SRA]
Identical group No.355430 (1 seq.)
>SRA1041458
SRR035091.244212
454 Sequencing (SRP001812)
441
515
+
Gln
CTG
[SRA]
Identical group No.355462 (1 seq.)
>SRA1042084
SRR035091.335459
454 Sequencing (SRP001812)
87
15
-
Gln
CTG
[SRA]
Identical group No.355479 (1 seq.)
>SRA1042298
SRR035091.369338
454 Sequencing (SRP001812)
243
171
-
Gln
CTG
[SRA]
Identical group No.355481 (1 seq.)
>SRA1042318
SRR035091.371880
454 Sequencing (SRP001812)
158
232
+
Gln
CTG
[SRA]
Identical group No.355488 (1 seq.)
>SRA1042436
SRR035091.386485
454 Sequencing (SRP001812)
164
90
-
Gln
CTG
[SRA]
Identical group No.355536 (1 seq.)
>SRA1040666
SRR035091.129896
454 Sequencing (SRP001812)
408
334
-
Gln
CTG
[SRA]
Identical group No.355538 (1 seq.)
>SRA1041156
SRR035091.206840
454 Sequencing (SRP001812)
194
268
+
Gln
CTG
[SRA]
Identical group No.355539 (1 seq.)
>SRA1041191
SRR035091.211134
454 Sequencing (SRP001812)
193
119
-
Gln
CTG
[SRA]
Identical group No.448073 (2 seq.)
>SRA1040644
SRR035091.126672
454 Sequencing (SRP001812)
33
107
+
Gln
CTG
[SRA]
>SRA1041426
SRR035091.240268
454 Sequencing (SRP001812)
33
107
+
Gln
CTG
[SRA]
Identical group No.448103 (1 seq.)
>SRA1041036
SRR035091.185889
454 Sequencing (SRP001812)
192
268
+
Gln
CTG
[SRA]
Identical group No.448144 (2 seq.)
>SRA1041759
SRR035091.289579
454 Sequencing (SRP001812)
66
138
+
Gln
CTG
[SRA]
>SRA1042858
SRR035091.456873
454 Sequencing (SRP001812)
62
134
+
Gln
CTG
[SRA]
Identical group No.448157 (1 seq.)
>SRA1041925
SRR035091.315944
454 Sequencing (SRP001812)
318
246
-
Gln
CTG
[SRA]
Identical group No.448187 (1 seq.)
>SRA1042467
SRR035091.390986
454 Sequencing (SRP001812)
328
253
-
Gln
CTG
[SRA]
Identical group No.448209 (1 seq.)
>SRA1042775
SRR035091.444416
454 Sequencing (SRP001812)
96
22
-
Gln
CTG
[SRA]
Identical group No.502965 (1 seq.)
>SRA1040034
SRR035091.22467
454 Sequencing (SRP001812)
164
91
-
Gln
CTG
[SRA]
Identical group No.502992 (2 seq.)
>SRA1040650
SRR035091.127399
454 Sequencing (SRP001812)
9
82
+
Gln
CTG
[SRA]
>SRA1040918
SRR035091.169048
454 Sequencing (SRP001812)
9
82
+
Gln
CTG
[SRA]
Identical group No.503013 (2 seq.)
>SRA1041200
SRR035091.212524
454 Sequencing (SRP001812)
135
208
+
Gln
CTG
[SRA]
>SRA1042226
SRR035091.358694
454 Sequencing (SRP001812)
135
208
+
Gln
CTG
[SRA]
Identical group No.503015 (1 seq.)
>SRA1041220
SRR035091.215502
454 Sequencing (SRP001812)
438
365
-
Gln
CTG
[SRA]
Identical group No.503017 (1 seq.)
>SRA1041311
SRR035091.226501
454 Sequencing (SRP001812)
239
312
+
Gln
CTG
[SRA]
Identical group No.503025 (1 seq.)
>SRA1041505
SRR035091.251967
454 Sequencing (SRP001812)
81
154
+
Gln
CTG
[SRA]
Identical group No.503031 (1 seq.)
>SRA1041668
SRR035091.277018
454 Sequencing (SRP001812)
104
31
-
Gln
CTG
[SRA]
Identical group No.503036 (1 seq.)
>SRA1041770
SRR035091.290849
454 Sequencing (SRP001812)
216
143
-
Gln
CTG
[SRA]
Identical group No.503045 (1 seq.)
>SRA1042100
SRR035091.337854
454 Sequencing (SRP001812)
135
65
-
Gln
CTG
[SRA]
Identical group No.503049 (1 seq.)
>SRA1042140
SRR035091.344717
454 Sequencing (SRP001812)
374
301
-
Gln
CTG
[SRA]
Identical group No.503060 (1 seq.)
>SRA1042396
SRR035091.381423
454 Sequencing (SRP001812)
41
114
+
Gln
CTG
[SRA]
Identical group No.503067 (1 seq.)
>SRA1042594
SRR035091.413590
454 Sequencing (SRP001812)
303
230
-
Gln
CTG
[SRA]
Identical group No.503075 (1 seq.)
>SRA1042852
SRR035091.455502
454 Sequencing (SRP001812)
486
413
-
Gln
CTG
[SRA]
Identical group No.503093 (1 seq.)
>SRA1040714
SRR035091.135780
454 Sequencing (SRP001812)
243
172
-
Gln
CTG
[SRA]
Identical group No.503094 (1 seq.)
>SRA1040929
SRR035091.170445
454 Sequencing (SRP001812)
135
62
-
Gln
CTG
[SRA]
Identical group No.503100 (1 seq.)
>SRA1042924
SRR035091.467821
454 Sequencing (SRP001812)
293
220
-
Gln
CTG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK