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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = CTT
HIT:
17 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.167931 (1 seq.)
>SRA1041142
SRR035091.204068
454 Sequencing (SRP001812)
408
333
-
Lys
CTT
[SRA]
Identical group No.167932 (1 seq.)
>SRA1041159
SRR035091.207168
454 Sequencing (SRP001812)
483
407
-
Lys
CTT
[SRA]
Identical group No.167956 (1 seq.)
>SRA1042410
SRR035091.383620
454 Sequencing (SRP001812)
294
370
+
Lys
CTT
[SRA]
Identical group No.167957 (2 seq.)
>SRA1042413
SRR035091.384505
454 Sequencing (SRP001812)
176
252
+
Lys
CTT
[SRA]
>SRA1042657
SRR035091.425191
454 Sequencing (SRP001812)
174
250
+
Lys
CTT
[SRA]
Identical group No.243009 (1 seq.)
>SRA1040278
SRR035091.71542
454 Sequencing (SRP001812)
161
234
+
Lys
CTT
[SRA]
Identical group No.243038 (2 seq.)
>SRA1040669
SRR035091.130471
454 Sequencing (SRP001812)
346
271
-
Lys
CTT
[SRA]
>SRA1041675
SRR035091.277336
454 Sequencing (SRP001812)
229
304
+
Lys
CTT
[SRA]
Identical group No.243086 (2 seq.)
>SRA1041460
SRR035091.244414
454 Sequencing (SRP001812)
80
155
+
Lys
CTT
[SRA]
>SRA1041645
SRR035091.273386
454 Sequencing (SRP001812)
80
155
+
Lys
CTT
[SRA]
Identical group No.243113 (1 seq.)
>SRA1041928
SRR035091.316065
454 Sequencing (SRP001812)
398
474
+
Lys
CTT
[SRA]
Identical group No.243115 (1 seq.)
>SRA1041961
SRR035091.319315
454 Sequencing (SRP001812)
202
129
-
Lys
CTT
[SRA]
Identical group No.355392 (1 seq.)
>SRA1040886
SRR035091.163812
454 Sequencing (SRP001812)
286
361
+
Lys
CTT
[SRA]
Identical group No.355397 (3 seq.)
>SRA1040931
SRR035091.170447
454 Sequencing (SRP001812)
320
245
-
Lys
CTT
[SRA]
>SRA1040994
SRR035091.179175
454 Sequencing (SRP001812)
322
247
-
Lys
CTT
[SRA]
>SRA1041985
SRR035091.323186
454 Sequencing (SRP001812)
322
247
-
Lys
CTT
[SRA]
Identical group No.355408 (1 seq.)
>SRA1041111
SRR035091.198394
454 Sequencing (SRP001812)
179
254
+
Lys
CTT
[SRA]
Identical group No.355519 (1 seq.)
>SRA1042794
SRR035091.448632
454 Sequencing (SRP001812)
228
301
+
Lys
CTT
[SRA]
Identical group No.448038 (1 seq.)
>SRA1040312
SRR035091.76210
454 Sequencing (SRP001812)
388
314
-
Lys
CTT
[SRA]
Identical group No.448083 (1 seq.)
>SRA1040776
SRR035091.148563
454 Sequencing (SRP001812)
374
298
-
Lys
CTT
[SRA]
Identical group No.503048 (1 seq.)
>SRA1042132
SRR035091.343790
454 Sequencing (SRP001812)
368
295
-
Lys
CTT
[SRA]
Identical group No.503078 (1 seq.)
>SRA1042899
SRR035091.463633
454 Sequencing (SRP001812)
265
192
-
Lys
CTT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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