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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = GAC
HIT:
9 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.243000 (1 seq.)
>SRA1040098
SRR035091.38495
454 Sequencing (SRP001812)
248
172
-
Val
GAC
[SRA]
Identical group No.243076 (1 seq.)
>SRA1041325
SRR035091.228105
454 Sequencing (SRP001812)
155
231
+
Val
GAC
[SRA]
Identical group No.243089 (1 seq.)
>SRA1041503
SRR035091.251751
454 Sequencing (SRP001812)
457
381
-
Val
GAC
[SRA]
Identical group No.243135 (1 seq.)
>SRA1042423
SRR035091.385056
454 Sequencing (SRP001812)
242
316
+
Val
GAC
[SRA]
Identical group No.243137 (1 seq.)
>SRA1042459
SRR035091.389516
454 Sequencing (SRP001812)
451
378
-
Val
GAC
[SRA]
Identical group No.243148 (1 seq.)
>SRA1042597
SRR035091.414097
454 Sequencing (SRP001812)
26
100
+
Val
GAC
[SRA]
Identical group No.243156 (1 seq.)
>SRA1042754
SRR035091.441348
454 Sequencing (SRP001812)
136
60
-
Val
GAC
[SRA]
Identical group No.448053 (1 seq.)
>SRA1040479
SRR035091.103613
454 Sequencing (SRP001812)
63
136
+
Val
GAC
[SRA]
Identical group No.448057 (1 seq.)
>SRA1040499
SRR035091.106218
454 Sequencing (SRP001812)
126
54
-
Val
GAC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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