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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = GAG
HIT:
12 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.66477 (1 seq.)
>SRA1040169
SRR035091.52218
454 Sequencing (SRP001812)
73
160
+
Leu
GAG
[SRA]
Identical group No.66491 (1 seq.)
>SRA1041490
SRR035091.249424
454 Sequencing (SRP001812)
362
275
-
Leu
GAG
[SRA]
Identical group No.89574 (2 seq.)
>SRA1040187
SRR035091.55010
454 Sequencing (SRP001812)
190
104
-
Leu
GAG
[SRA]
>SRA1040290
SRR035091.72715
454 Sequencing (SRP001812)
190
104
-
Leu
GAG
[SRA]
Identical group No.89576 (1 seq.)
>SRA1040259
SRR035091.67750
454 Sequencing (SRP001812)
119
35
-
Leu
GAG
[SRA]
Identical group No.89594 (1 seq.)
>SRA1040914
SRR035091.168432
454 Sequencing (SRP001812)
374
288
-
Leu
GAG
[SRA]
Identical group No.89603 (1 seq.)
>SRA1041677
SRR035091.277542
454 Sequencing (SRP001812)
322
236
-
Leu
GAG
[SRA]
Identical group No.89620 (2 seq.)
>SRA1042664
SRR035091.426223
454 Sequencing (SRP001812)
357
273
-
Leu
GAG
[SRA]
>SRA1042673
SRR035091.428002
454 Sequencing (SRP001812)
359
275
-
Leu
GAG
[SRA]
Identical group No.110778 (1 seq.)
>SRA1041702
SRR035091.280496
454 Sequencing (SRP001812)
39
122
+
Leu
GAG
[SRA]
Identical group No.110782 (1 seq.)
>SRA1042486
SRR035091.395768
454 Sequencing (SRP001812)
163
247
+
Leu
GAG
[SRA]
Identical group No.132286 (1 seq.)
>SRA1040368
SRR035091.85471
454 Sequencing (SRP001812)
230
312
+
Leu
GAG
[SRA]
Identical group No.132292 (1 seq.)
>SRA1040791
SRR035091.150536
454 Sequencing (SRP001812)
185
269
+
Leu
GAG
[SRA]
Identical group No.355314 (1 seq.)
>SRA1040000
SRR035091.14463
454 Sequencing (SRP001812)
97
22
-
Leu
GAG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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