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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = GAT
HIT:
20 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.110771 (1 seq.)
>SRA1040689
SRR035091.133703
454 Sequencing (SRP001812)
69
154
+
Ile
GAT
[SRA]
Identical group No.167922 (1 seq.)
>SRA1040830
SRR035091.156815
454 Sequencing (SRP001812)
121
42
-
Ile
GAT
[SRA]
Identical group No.167929 (1 seq.)
>SRA1041106
SRR035091.197454
454 Sequencing (SRP001812)
116
193
+
Ile
GAT
[SRA]
Identical group No.243056 (1 seq.)
>SRA1040920
SRR035091.169358
454 Sequencing (SRP001812)
305
229
-
Ile
GAT
[SRA]
Identical group No.243079 (1 seq.)
>SRA1041382
SRR035091.235056
454 Sequencing (SRP001812)
349
424
+
Ile
GAT
[SRA]
Identical group No.243080 (1 seq.)
>SRA1041397
SRR035091.237110
454 Sequencing (SRP001812)
152
76
-
Ile
GAT
[SRA]
Identical group No.243082 (1 seq.)
>SRA1041409
SRR035091.238024
454 Sequencing (SRP001812)
181
257
+
Ile
GAT
[SRA]
Identical group No.243084 (1 seq.)
>SRA1041453
SRR035091.243589
454 Sequencing (SRP001812)
334
260
-
Ile
GAT
[SRA]
Identical group No.243122 (1 seq.)
>SRA1042016
SRR035091.328719
454 Sequencing (SRP001812)
246
322
+
Ile
GAT
[SRA]
Identical group No.243123 (1 seq.)
>SRA1042023
SRR035091.329127
454 Sequencing (SRP001812)
223
149
-
Ile
GAT
[SRA]
Identical group No.243131 (1 seq.)
>SRA1042227
SRR035091.358894
454 Sequencing (SRP001812)
259
184
-
Ile
GAT
[SRA]
Identical group No.243168 (1 seq.)
>SRA1042947
SRR035091.471955
454 Sequencing (SRP001812)
3
79
+
Ile
GAT
[SRA]
Identical group No.355329 (1 seq.)
>SRA1040135
SRR035091.45112
454 Sequencing (SRP001812)
95
170
+
Ile
GAT
[SRA]
Identical group No.355406 (1 seq.)
>SRA1041091
SRR035091.194855
454 Sequencing (SRP001812)
151
77
-
Ile
GAT
[SRA]
Identical group No.355421 (1 seq.)
>SRA1041287
SRR035091.223979
454 Sequencing (SRP001812)
414
340
-
Ile
GAT
[SRA]
Identical group No.448069 (1 seq.)
>SRA1040575
SRR035091.117592
454 Sequencing (SRP001812)
237
165
-
Ile
GAT
[SRA]
Identical group No.448138 (1 seq.)
>SRA1041688
SRR035091.279239
454 Sequencing (SRP001812)
236
163
-
Ile
GAT
[SRA]
Identical group No.448155 (1 seq.)
>SRA1041921
SRR035091.315741
454 Sequencing (SRP001812)
219
145
-
Ile
GAT
[SRA]
Identical group No.448197 (1 seq.)
>SRA1042577
SRR035091.411121
454 Sequencing (SRP001812)
65
139
+
Ile
GAT
[SRA]
Identical group No.502998 (1 seq.)
>SRA1040842
SRR035091.158778
454 Sequencing (SRP001812)
122
193
+
Ile
GAT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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