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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = GCA
HIT:
26 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.89583 (1 seq.)
>SRA1040437
SRR035091.97416
454 Sequencing (SRP001812)
234
151
-
Cys
GCA
[SRA]
Identical group No.151185 (1 seq.)
>SRA1040772
SRR035091.146058
454 Sequencing (SRP001812)
224
304
+
Cys
GCA
[SRA]
Identical group No.167912 (1 seq.)
>SRA1040480
SRR035091.103643
454 Sequencing (SRP001812)
164
89
-
Cys
GCA
[SRA]
Identical group No.167941 (1 seq.)
>SRA1041484
SRR035091.248806
454 Sequencing (SRP001812)
289
212
-
Cys
GCA
[SRA]
Identical group No.167945 (1 seq.)
>SRA1041854
SRR035091.305436
454 Sequencing (SRP001812)
106
183
+
Cys
GCA
[SRA]
Identical group No.167964 (1 seq.)
>SRA1042602
SRR035091.414567
454 Sequencing (SRP001812)
129
206
+
Cys
GCA
[SRA]
Identical group No.243047 (1 seq.)
>SRA1040746
SRR035091.141845
454 Sequencing (SRP001812)
133
209
+
Cys
GCA
[SRA]
Identical group No.243136 (1 seq.)
>SRA1042440
SRR035091.386846
454 Sequencing (SRP001812)
551
478
-
Cys
GCA
[SRA]
Identical group No.243145 (1 seq.)
>SRA1042567
SRR035091.409586
454 Sequencing (SRP001812)
283
356
+
Cys
GCA
[SRA]
Identical group No.355319 (1 seq.)
>SRA1040039
SRR035091.23539
454 Sequencing (SRP001812)
231
303
+
Cys
GCA
[SRA]
Identical group No.355339 (1 seq.)
>SRA1040228
SRR035091.63197
454 Sequencing (SRP001812)
203
275
+
Cys
GCA
[SRA]
Identical group No.355439 (2 seq.)
>SRA1041614
SRR035091.269952
454 Sequencing (SRP001812)
380
305
-
Cys
GCA
[SRA]
>SRA1042431
SRR035091.385878
454 Sequencing (SRP001812)
382
307
-
Cys
GCA
[SRA]
Identical group No.355460 (1 seq.)
>SRA1042070
SRR035091.334067
454 Sequencing (SRP001812)
109
182
+
Cys
GCA
[SRA]
Identical group No.355515 (1 seq.)
>SRA1042753
SRR035091.441348
454 Sequencing (SRP001812)
218
143
-
Cys
GCA
[SRA]
Identical group No.448039 (1 seq.)
>SRA1040343
SRR035091.81690
454 Sequencing (SRP001812)
337
263
-
Cys
GCA
[SRA]
Identical group No.448051 (1 seq.)
>SRA1040474
SRR035091.103197
454 Sequencing (SRP001812)
293
221
-
Cys
GCA
[SRA]
Identical group No.448127 (1 seq.)
>SRA1041491
SRR035091.249424
454 Sequencing (SRP001812)
274
200
-
Cys
GCA
[SRA]
Identical group No.448149 (1 seq.)
>SRA1041808
SRR035091.297909
454 Sequencing (SRP001812)
146
72
-
Cys
GCA
[SRA]
Identical group No.448167 (1 seq.)
>SRA1042123
SRR035091.342372
454 Sequencing (SRP001812)
169
243
+
Cys
GCA
[SRA]
Identical group No.448190 (1 seq.)
>SRA1042509
SRR035091.400297
454 Sequencing (SRP001812)
160
234
+
Cys
GCA
[SRA]
Identical group No.448192 (1 seq.)
>SRA1042520
SRR035091.401505
454 Sequencing (SRP001812)
340
266
-
Cys
GCA
[SRA]
Identical group No.448205 (1 seq.)
>SRA1042685
SRR035091.429491
454 Sequencing (SRP001812)
129
57
-
Cys
GCA
[SRA]
Identical group No.502971 (1 seq.)
>SRA1040089
SRR035091.36840
454 Sequencing (SRP001812)
13
84
+
Cys
GCA
[SRA]
Identical group No.503059 (1 seq.)
>SRA1042346
SRR035091.375280
454 Sequencing (SRP001812)
267
340
+
Cys
GCA
[SRA]
Identical group No.503066 (1 seq.)
>SRA1042579
SRR035091.411121
454 Sequencing (SRP001812)
219
292
+
Cys
GCA
[SRA]
Identical group No.503097 (1 seq.)
>SRA1042313
SRR035091.371087
454 Sequencing (SRP001812)
302
232
-
Cys
GCA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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