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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = GCC
HIT:
12 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.167921 (1 seq.)
>SRA1040758
SRR035091.143982
454 Sequencing (SRP001812)
125
48
-
Gly
GCC
[SRA]
Identical group No.243085 (1 seq.)
>SRA1041456
SRR035091.244157
454 Sequencing (SRP001812)
197
273
+
Gly
GCC
[SRA]
Identical group No.243152 (1 seq.)
>SRA1042712
SRR035091.434519
454 Sequencing (SRP001812)
166
90
-
Gly
GCC
[SRA]
Identical group No.355480 (1 seq.)
>SRA1042309
SRR035091.370532
454 Sequencing (SRP001812)
96
21
-
Gly
GCC
[SRA]
Identical group No.448018 (1 seq.)
>SRA1040008
SRR035091.16365
454 Sequencing (SRP001812)
88
159
+
Gly
GCC
[SRA]
Identical group No.448056 (1 seq.)
>SRA1040493
SRR035091.105573
454 Sequencing (SRP001812)
107
36
-
Gly
GCC
[SRA]
Identical group No.448062 (1 seq.)
>SRA1040528
SRR035091.109992
454 Sequencing (SRP001812)
165
239
+
Gly
GCC
[SRA]
Identical group No.448140 (1 seq.)
>SRA1041710
SRR035091.281058
454 Sequencing (SRP001812)
489
417
-
Gly
GCC
[SRA]
Identical group No.448201 (1 seq.)
>SRA1042642
SRR035091.422413
454 Sequencing (SRP001812)
263
337
+
Gly
GCC
[SRA]
Identical group No.448208 (1 seq.)
>SRA1042752
SRR035091.441153
454 Sequencing (SRP001812)
226
153
-
Gly
GCC
[SRA]
Identical group No.502978 (1 seq.)
>SRA1040260
SRR035091.67798
454 Sequencing (SRP001812)
80
8
-
Gly
GCC
[SRA]
Identical group No.503030 (1 seq.)
>SRA1041651
SRR035091.273897
454 Sequencing (SRP001812)
383
311
-
Gly
GCC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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