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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = GCG
HIT:
13 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.167934 (1 seq.)
>SRA1041291
SRR035091.224203
454 Sequencing (SRP001812)
260
185
-
Arg
GCG
[SRA]
Identical group No.242994 (1 seq.)
>SRA1040021
SRR035091.19995
454 Sequencing (SRP001812)
137
63
-
Arg
GCG
[SRA]
Identical group No.243025 (2 seq.)
>SRA1040470
SRR035091.102572
454 Sequencing (SRP001812)
169
95
-
Arg
GCG
[SRA]
>SRA1041465
SRR035091.245497
454 Sequencing (SRP001812)
203
129
-
Arg
GCG
[SRA]
Identical group No.243088 (1 seq.)
>SRA1041502
SRR035091.251666
454 Sequencing (SRP001812)
73
-1
-
Arg
GCG
[SRA]
Identical group No.243120 (1 seq.)
>SRA1041995
SRR035091.324805
454 Sequencing (SRP001812)
283
207
-
Arg
GCG
[SRA]
Identical group No.355381 (1 seq.)
>SRA1040762
SRR035091.144051
454 Sequencing (SRP001812)
114
39
-
Arg
GCG
[SRA]
Identical group No.355383 (1 seq.)
>SRA1040789
SRR035091.150256
454 Sequencing (SRP001812)
524
452
-
Arg
GCG
[SRA]
Identical group No.448032 (1 seq.)
>SRA1040192
SRR035091.55680
454 Sequencing (SRP001812)
281
354
+
Arg
GCG
[SRA]
Identical group No.448055 (1 seq.)
>SRA1040489
SRR035091.105024
454 Sequencing (SRP001812)
264
336
+
Arg
GCG
[SRA]
Identical group No.448060 (1 seq.)
>SRA1040521
SRR035091.109622
454 Sequencing (SRP001812)
391
467
+
Arg
GCG
[SRA]
Identical group No.448120 (1 seq.)
>SRA1041320
SRR035091.227812
454 Sequencing (SRP001812)
33
107
+
Arg
GCG
[SRA]
Identical group No.448142 (1 seq.)
>SRA1041721
SRR035091.282613
454 Sequencing (SRP001812)
514
440
-
Arg
GCG
[SRA]
Identical group No.448213 (1 seq.)
>SRA1042809
SRR035091.450132
454 Sequencing (SRP001812)
13
89
+
Arg
GCG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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