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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = GCG
HIT:
31 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.244496 (6 seq.)
>WENV170620841
FUWD013041031
[FUWD] metagenome; unknown
947
1024
+
Arg
GCG
[ENA]
¢þ
>WENV170628996
FUWD013258121
[FUWD] metagenome; unknown
2903
2826
-
Arg
GCG
[ENA]
¢þ
>SRA1018830
SRR035082.354343
454 Sequencing (SRP001803)
217
140
-
Arg
GCG
[SRA]
>SRA1030645
SRR035087.308797
454 Sequencing (SRP001808)
70
147
+
Arg
GCG
[SRA]
>SRA1040071
SRR035091.30673
454 Sequencing (SRP001812)
181
258
+
Arg
GCG
[SRA]
>SRA1044379
SRR035092.270893
454 Sequencing (SRP001813)
85
8
-
Arg
GCG
[SRA]
Identical group No.258041 (1 seq.)
>SRA1041291
SRR035091.224203
454 Sequencing (SRP001812)
260
185
-
Arg
GCG
[SRA]
Identical group No.272614 (3 seq.)
>WENV170619158
FUWD013002813
[FUWD] metagenome; unknown
161
85
-
Arg
GCG
[ENA]
¢þ
>SRA1034783
SRR035089.173386
454 Sequencing (SRP001810)
122
46
-
Arg
GCG
[SRA]
>SRA1042189
SRR035091.351648
454 Sequencing (SRP001812)
86
10
-
Arg
GCG
[SRA]
Identical group No.272954 (5 seq.)
>WENV170621240
FUWD013053543
[FUWD] metagenome; unknown
276
350
+
Arg
GCG
[ENA]
¢þ
>WENV170629420
FUWD013270042
[FUWD] metagenome; unknown
276
350
+
Arg
GCG
[ENA]
¢þ
>SRA1033146
SRR035088.183200
454 Sequencing (SRP001809)
212
286
+
Arg
GCG
[SRA]
>SRA1036750
SRR035089.605992
454 Sequencing (SRP001810)
71
145
+
Arg
GCG
[SRA]
>SRA1040269
SRR035091.69868
454 Sequencing (SRP001812)
247
321
+
Arg
GCG
[SRA]
Identical group No.358348 (3 seq.)
>WENV170612431
FUWD012608866
[FUWD] metagenome; unknown
90
14
-
Arg
GCG
[ENA]
¢þ
>SRA1021949
SRR035083.331268
454 Sequencing (SRP001804)
211
287
+
Arg
GCG
[SRA]
>SRA1040562
SRR035091.115470
454 Sequencing (SRP001812)
90
14
-
Arg
GCG
[SRA]
Identical group No.358360 (2 seq.)
>WENV170612492
FUWD012622515
[FUWD] metagenome; unknown
39
115
+
Arg
GCG
[ENA]
¢þ
>SRA1041595
SRR035091.267844
454 Sequencing (SRP001812)
39
115
+
Arg
GCG
[SRA]
Identical group No.358472 (4 seq.)
>WENV170613368
FUWD012800133
[FUWD] metagenome; unknown
55
129
+
Arg
GCG
[ENA]
¢þ
>WENV170626504
FUWD013223964
[FUWD] metagenome; unknown
611
537
-
Arg
GCG
[ENA]
¢þ
>SRA1032796
SRR035088.105158
454 Sequencing (SRP001809)
133
59
-
Arg
GCG
[SRA]
>SRA1041118
SRR035091.199504
454 Sequencing (SRP001812)
410
336
-
Arg
GCG
[SRA]
Identical group No.358793 (4 seq.)
>WENV170623037
FUWD013133888
[FUWD] metagenome; unknown
899
823
-
Arg
GCG
[ENA]
¢þ
>WENV170631271
FUWD013346934
[FUWD] metagenome; unknown
899
823
-
Arg
GCG
[ENA]
¢þ
>SRA1018224
SRR035082.258329
454 Sequencing (SRP001803)
204
128
-
Arg
GCG
[SRA]
>SRA1040241
SRR035091.64639
454 Sequencing (SRP001812)
138
62
-
Arg
GCG
[SRA]
Identical group No.358874 (19 seq.)
>WENV170624311
FUWD013179602
[FUWD] metagenome; unknown
3430
3506
+
Arg
GCG
[ENA]
¢þ
>WENV170632598
FUWD013384921
[FUWD] metagenome; unknown
3430
3506
+
Arg
GCG
[ENA]
¢þ
>SRA1018549
SRR035082.308810
454 Sequencing (SRP001803)
361
437
+
Arg
GCG
[SRA]
>SRA1018615
SRR035082.322433
454 Sequencing (SRP001803)
293
217
-
Arg
GCG
[SRA]
>SRA1033830
SRR035088.368272
454 Sequencing (SRP001809)
288
212
-
Arg
GCG
[SRA]
>SRA1039979
SRR035091.8881
454 Sequencing (SRP001812)
20
96
+
Arg
GCG
[SRA]
>SRA1040335
SRR035091.80670
454 Sequencing (SRP001812)
410
334
-
Arg
GCG
[SRA]
>SRA1040364
SRR035091.85167
454 Sequencing (SRP001812)
239
315
+
Arg
GCG
[SRA]
>SRA1040753
SRR035091.143597
454 Sequencing (SRP001812)
206
130
-
Arg
GCG
[SRA]
>SRA1040866
SRR035091.160897
454 Sequencing (SRP001812)
144
68
-
Arg
GCG
[SRA]
>SRA1041203
SRR035091.213004
454 Sequencing (SRP001812)
157
81
-
Arg
GCG
[SRA]
>SRA1041844
SRR035091.303898
454 Sequencing (SRP001812)
80
4
-
Arg
GCG
[SRA]
>SRA1041896
SRR035091.312805
454 Sequencing (SRP001812)
47
123
+
Arg
GCG
[SRA]
>SRA1042949
SRR035091.472250
454 Sequencing (SRP001812)
100
176
+
Arg
GCG
[SRA]
>SRA1042989
SRR035092.15941
454 Sequencing (SRP001813)
363
287
-
Arg
GCG
[SRA]
>SRA1043930
SRR035092.196474
454 Sequencing (SRP001813)
209
285
+
Arg
GCG
[SRA]
>SRA1044761
SRR035092.335993
454 Sequencing (SRP001813)
344
420
+
Arg
GCG
[SRA]
>SRA1048063
SRR035094.101345
454 Sequencing (SRP001815)
183
107
-
Arg
GCG
[SRA]
>SRA1048648
SRR035094.216176
454 Sequencing (SRP001815)
89
13
-
Arg
GCG
[SRA]
Identical group No.381159 (1 seq.)
>SRA1040021
SRR035091.19995
454 Sequencing (SRP001812)
137
63
-
Arg
GCG
[SRA]
Identical group No.381199 (2 seq.)
>SRA1040470
SRR035091.102572
454 Sequencing (SRP001812)
169
95
-
Arg
GCG
[SRA]
>SRA1041465
SRR035091.245497
454 Sequencing (SRP001812)
203
129
-
Arg
GCG
[SRA]
Identical group No.381279 (1 seq.)
>SRA1041502
SRR035091.251666
454 Sequencing (SRP001812)
73
-1
-
Arg
GCG
[SRA]
Identical group No.381315 (1 seq.)
>SRA1041995
SRR035091.324805
454 Sequencing (SRP001812)
283
207
-
Arg
GCG
[SRA]
Identical group No.453464 (14 seq.)
>WENV170620665
FUWD013036333
[FUWD] metagenome; unknown
2914
2989
+
Arg
GCG
[ENA]
¢þ
>WENV170628813
FUWD013253612
[FUWD] metagenome; unknown
2914
2989
+
Arg
GCG
[ENA]
¢þ
>SRA1034188
SRR035089.18145
454 Sequencing (SRP001810)
185
110
-
Arg
GCG
[SRA]
>SRA1035664
SRR035089.351298
454 Sequencing (SRP001810)
168
243
+
Arg
GCG
[SRA]
>SRA1040452
SRR035091.99697
454 Sequencing (SRP001812)
214
289
+
Arg
GCG
[SRA]
>SRA1040715
SRR035091.135942
454 Sequencing (SRP001812)
105
30
-
Arg
GCG
[SRA]
>SRA1040722
SRR035091.136583
454 Sequencing (SRP001812)
187
262
+
Arg
GCG
[SRA]
>SRA1041989
SRR035091.323677
454 Sequencing (SRP001812)
305
380
+
Arg
GCG
[SRA]
>SRA1042021
SRR035091.328963
454 Sequencing (SRP001812)
361
286
-
Arg
GCG
[SRA]
>SRA1042761
SRR035091.442900
454 Sequencing (SRP001812)
128
203
+
Arg
GCG
[SRA]
>SRA1042877
SRR035091.460300
454 Sequencing (SRP001812)
115
190
+
Arg
GCG
[SRA]
>SRA1049954
SRR035095.166872
454 Sequencing (SRP001816)
254
329
+
Arg
GCG
[SRA]
>SRA1050249
SRR035095.221535
454 Sequencing (SRP001816)
98
173
+
Arg
GCG
[SRA]
>SRA1050386
SRR035095.250313
454 Sequencing (SRP001816)
96
171
+
Arg
GCG
[SRA]
Identical group No.547805 (3 seq.)
>WENV170605136
FUWD010453442
[FUWD] metagenome; unknown
155
82
-
Arg
GCG
[ENA]
¢þ
>SRA1017006
SRR035082.67926
454 Sequencing (SRP001803)
263
190
-
Arg
GCG
[SRA]
>SRA1041047
SRR035091.187509
454 Sequencing (SRP001812)
160
87
-
Arg
GCG
[SRA]
Identical group No.573526 (1 seq.)
>SRA1040762
SRR035091.144051
454 Sequencing (SRP001812)
114
39
-
Arg
GCG
[SRA]
Identical group No.573530 (1 seq.)
>SRA1040789
SRR035091.150256
454 Sequencing (SRP001812)
524
452
-
Arg
GCG
[SRA]
Identical group No.695303 (3 seq.)
>WENV170571585
FLOH01000213
[FLOH] marine metagenome; water
29477
29403
-
Arg
GCG
[ENA]
¢þ
>WENV170572819
FLOH01001327
[FLOH] marine metagenome; water
19527
19455
-
Arg
GCG
[ENA]
¢þ
>SRA1042695
SRR035091.430912
454 Sequencing (SRP001812)
197
123
-
Arg
GCG
[SRA]
Identical group No.710556 (4 seq.)
>WENV170602319
FUWD010226255
[FUWD] metagenome; unknown
454
528
+
Arg
GCG
[ENA]
¢þ
>SRA1017395
SRR035082.132668
454 Sequencing (SRP001803)
338
412
+
Arg
GCG
[SRA]
>SRA1019557
SRR035082.476068
454 Sequencing (SRP001803)
207
281
+
Arg
GCG
[SRA]
>SRA1042716
SRR035091.435013
454 Sequencing (SRP001812)
318
244
-
Arg
GCG
[SRA]
Identical group No.710590 (13 seq.)
>WENV170603280
FUWD010298477
[FUWD] metagenome; unknown
379
453
+
Arg
GCG
[ENA]
¢þ
>SRA1020249
SRR035083.82630
454 Sequencing (SRP001804)
222
296
+
Arg
GCG
[SRA]
>SRA1036913
SRR035090.37710
454 Sequencing (SRP001811)
270
344
+
Arg
GCG
[SRA]
>SRA1037062
SRR035090.68791
454 Sequencing (SRP001811)
276
350
+
Arg
GCG
[SRA]
>SRA1037588
SRR035090.159366
454 Sequencing (SRP001811)
275
349
+
Arg
GCG
[SRA]
>SRA1037921
SRR035090.218561
454 Sequencing (SRP001811)
274
348
+
Arg
GCG
[SRA]
>SRA1037950
SRR035090.225422
454 Sequencing (SRP001811)
275
349
+
Arg
GCG
[SRA]
>SRA1037993
SRR035090.230712
454 Sequencing (SRP001811)
379
453
+
Arg
GCG
[SRA]
>SRA1038241
SRR035090.269768
454 Sequencing (SRP001811)
276
350
+
Arg
GCG
[SRA]
>SRA1038335
SRR035090.289225
454 Sequencing (SRP001811)
274
348
+
Arg
GCG
[SRA]
>SRA1038810
SRR035090.371255
454 Sequencing (SRP001811)
275
349
+
Arg
GCG
[SRA]
>SRA1041658
SRR035091.275469
454 Sequencing (SRP001812)
103
177
+
Arg
GCG
[SRA]
>SRA1042334
SRR035091.373811
454 Sequencing (SRP001812)
105
179
+
Arg
GCG
[SRA]
Identical group No.710811 (9 seq.)
>WENV170608117
FUWD010894958
[FUWD] metagenome; unknown
577
503
-
Arg
GCG
[ENA]
¢þ
>WENV170622806
FUWD013121451
[FUWD] metagenome; unknown
388
462
+
Arg
GCG
[ENA]
¢þ
>WENV170631020
FUWD013335176
[FUWD] metagenome; unknown
388
462
+
Arg
GCG
[ENA]
¢þ
>SRA1018927
SRR035082.371334
454 Sequencing (SRP001803)
132
206
+
Arg
GCG
[SRA]
>SRA1034066
SRR035088.472578
454 Sequencing (SRP001809)
81
7
-
Arg
GCG
[SRA]
>SRA1041347
SRR035091.230435
454 Sequencing (SRP001812)
77
151
+
Arg
GCG
[SRA]
>SRA1042610
SRR035091.415706
454 Sequencing (SRP001812)
333
407
+
Arg
GCG
[SRA]
>SRA1042640
SRR035091.421842
454 Sequencing (SRP001812)
77
151
+
Arg
GCG
[SRA]
>SRA1042904
SRR035091.464873
454 Sequencing (SRP001812)
82
156
+
Arg
GCG
[SRA]
Identical group No.710824 (2 seq.)
>WENV170608176
FUWD010899182
[FUWD] metagenome; unknown
291
219
-
Arg
GCG
[ENA]
¢þ
>SRA1040009
SRR035091.16381
454 Sequencing (SRP001812)
69
141
+
Arg
GCG
[SRA]
Identical group No.711106 (5 seq.)
>WENV170612645
FUWD012650165
[FUWD] metagenome; unknown
163
235
+
Arg
GCG
[ENA]
¢þ
>SRA1018226
SRR035082.258337
454 Sequencing (SRP001803)
137
209
+
Arg
GCG
[SRA]
>SRA1041596
SRR035091.267892
454 Sequencing (SRP001812)
305
379
+
Arg
GCG
[SRA]
>SRA1044131
SRR035092.228757
454 Sequencing (SRP001813)
169
241
+
Arg
GCG
[SRA]
>SRA1047906
SRR035094.65164
454 Sequencing (SRP001815)
27
101
+
Arg
GCG
[SRA]
Identical group No.726959 (1 seq.)
>SRA1040192
SRR035091.55680
454 Sequencing (SRP001812)
281
354
+
Arg
GCG
[SRA]
Identical group No.726988 (1 seq.)
>SRA1040489
SRR035091.105024
454 Sequencing (SRP001812)
264
336
+
Arg
GCG
[SRA]
Identical group No.726993 (1 seq.)
>SRA1040521
SRR035091.109622
454 Sequencing (SRP001812)
391
467
+
Arg
GCG
[SRA]
Identical group No.727038 (1 seq.)
>SRA1041007
SRR035091.180870
454 Sequencing (SRP001812)
85
159
+
Arg
GCG
[SRA]
Identical group No.727062 (1 seq.)
>SRA1041320
SRR035091.227812
454 Sequencing (SRP001812)
33
107
+
Arg
GCG
[SRA]
Identical group No.727090 (1 seq.)
>SRA1041721
SRR035091.282613
454 Sequencing (SRP001812)
514
440
-
Arg
GCG
[SRA]
Identical group No.727117 (1 seq.)
>SRA1042076
SRR035091.335078
454 Sequencing (SRP001812)
156
228
+
Arg
GCG
[SRA]
Identical group No.727171 (1 seq.)
>SRA1042809
SRR035091.450132
454 Sequencing (SRP001812)
13
89
+
Arg
GCG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK