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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = GGA
HIT:
16 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.17464 (1 seq.)
>SRA1040639
SRR035091.126114
454 Sequencing (SRP001812)
206
115
-
Ser
GGA
[SRA]
Identical group No.17466 (1 seq.)
>SRA1041233
SRR035091.217729
454 Sequencing (SRP001812)
92
1
-
Ser
GGA
[SRA]
Identical group No.39703 (1 seq.)
>SRA1039991
SRR035091.11305
454 Sequencing (SRP001812)
255
344
+
Ser
GGA
[SRA]
Identical group No.39720 (1 seq.)
>SRA1041953
SRR035091.318007
454 Sequencing (SRP001812)
287
375
+
Ser
GGA
[SRA]
Identical group No.39726 (1 seq.)
>SRA1042617
SRR035091.417152
454 Sequencing (SRP001812)
170
259
+
Ser
GGA
[SRA]
Identical group No.39728 (1 seq.)
>SRA1042631
SRR035091.419472
454 Sequencing (SRP001812)
101
190
+
Ser
GGA
[SRA]
Identical group No.52457 (1 seq.)
>SRA1041175
SRR035091.209062
454 Sequencing (SRP001812)
351
439
+
Ser
GGA
[SRA]
Identical group No.66488 (1 seq.)
>SRA1041285
SRR035091.223474
454 Sequencing (SRP001812)
125
38
-
Ser
GGA
[SRA]
Identical group No.66492 (1 seq.)
>SRA1041531
SRR035091.256563
454 Sequencing (SRP001812)
239
152
-
Ser
GGA
[SRA]
Identical group No.89579 (1 seq.)
>SRA1040365
SRR035091.85222
454 Sequencing (SRP001812)
133
47
-
Ser
GGA
[SRA]
Identical group No.89605 (1 seq.)
>SRA1041932
SRR035091.316628
454 Sequencing (SRP001812)
117
33
-
Ser
GGA
[SRA]
Identical group No.110768 (1 seq.)
>SRA1040576
SRR035091.117629
454 Sequencing (SRP001812)
473
390
-
Ser
GGA
[SRA]
Identical group No.110793 (1 seq.)
>SRA1040250
SRR035091.65632
454 Sequencing (SRP001812)
349
264
-
Ser
GGA
[SRA]
Identical group No.145020 (1 seq.)
>SRA1041508
SRR035091.252838
454 Sequencing (SRP001812)
101
181
+
Ser
GGA
[SRA]
Identical group No.145024 (1 seq.)
>SRA1042365
SRR035091.378534
454 Sequencing (SRP001812)
342
262
-
Ser
GGA
[SRA]
Identical group No.149382 (1 seq.)
>SRA1041822
SRR035091.299662
454 Sequencing (SRP001812)
394
476
+
Ser
GGA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK