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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = GGC
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.167962 (1 seq.)
>SRA1042565
SRR035091.409503
454 Sequencing (SRP001812)
384
461
+
Ala
GGC
[SRA]
Identical group No.243041 (1 seq.)
>SRA1040696
SRR035091.134300
454 Sequencing (SRP001812)
258
181
-
Ala
GGC
[SRA]
Identical group No.243063 (1 seq.)
>SRA1041056
SRR035091.188786
454 Sequencing (SRP001812)
383
459
+
Ala
GGC
[SRA]
Identical group No.243075 (1 seq.)
>SRA1041269
SRR035091.221865
454 Sequencing (SRP001812)
397
473
+
Ala
GGC
[SRA]
Identical group No.243110 (1 seq.)
>SRA1041876
SRR035091.309001
454 Sequencing (SRP001812)
278
352
+
Ala
GGC
[SRA]
Identical group No.243125 (1 seq.)
>SRA1042089
SRR035091.336448
454 Sequencing (SRP001812)
165
241
+
Ala
GGC
[SRA]
Identical group No.355332 (2 seq.)
>SRA1040153
SRR035091.49004
454 Sequencing (SRP001812)
19
91
+
Ala
GGC
[SRA]
>SRA1040372
SRR035091.86260
454 Sequencing (SRP001812)
19
91
+
Ala
GGC
[SRA]
Identical group No.355514 (1 seq.)
>SRA1042709
SRR035091.433679
454 Sequencing (SRP001812)
373
298
-
Ala
GGC
[SRA]
Identical group No.355518 (1 seq.)
>SRA1042769
SRR035091.444165
454 Sequencing (SRP001812)
269
345
+
Ala
GGC
[SRA]
Identical group No.448126 (1 seq.)
>SRA1041481
SRR035091.248486
454 Sequencing (SRP001812)
444
518
+
Ala
GGC
[SRA]
Identical group No.503002 (3 seq.)
>SRA1040990
SRR035091.178783
454 Sequencing (SRP001812)
127
200
+
Ala
GGC
[SRA]
>SRA1042110
SRR035091.339740
454 Sequencing (SRP001812)
415
488
+
Ala
GGC
[SRA]
>SRA1042216
SRR035091.357327
454 Sequencing (SRP001812)
192
265
+
Ala
GGC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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