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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = GGG
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.167946 (1 seq.)
>SRA1041873
SRR035091.308173
454 Sequencing (SRP001812)
185
109
-
Pro
GGG
[SRA]
Identical group No.243022 (1 seq.)
>SRA1040428
SRR035091.96170
454 Sequencing (SRP001812)
154
230
+
Pro
GGG
[SRA]
Identical group No.243103 (1 seq.)
>SRA1041713
SRR035091.281413
454 Sequencing (SRP001812)
107
31
-
Pro
GGG
[SRA]
Identical group No.448180 (1 seq.)
>SRA1042326
SRR035091.373037
454 Sequencing (SRP001812)
439
513
+
Pro
GGG
[SRA]
Identical group No.448215 (1 seq.)
>SRA1042822
SRR035091.450886
454 Sequencing (SRP001812)
265
191
-
Pro
GGG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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